Superfund Research Program

Environmental, Microbial and Mammalian Biomolecular Responses to AhR Ligands

Center Director: Norbert E. Kaminski
Grant Number: P42ES004911
Funding Period: 1989-2027

Program Links

Publications

2023

• Bagga AD, Johnson BP, Zhang Q. 2023. A minimal human physiologically based kinetic model of thyroid hormones and chemical disruption of plasma thyroid hormone binding proteins. Front. Endocrinol 14:1168663. doi:10.3389/fendo.2023.1168663 PMID:37305053 PMCID:PMC1024845
• Cholico G, Fling RR, Sink WJ, Nault R, Zacharewski T. 2023. Inhibition of the urea cycle by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin increases serum ammonia levels in mice. J Biol Chem 300(1):105500. doi:10.1016/j.jbc.2023.105500 PMID:38013089 PMCID:10731612
• Cholico G, Orlowska K, Fling RR, Sink WJ, Zacharewski N, Fader KA, Nault R, Zacharewski TR. 2023. Consequences of reprogramming acetyl-CoA metabolism by 2,3,7,8-tetrachlorodibenzo-p-dioxin in the mouse liver. Sci Rep 13(1):4138. doi:10.1038/s41598-023-31087-9 PMID:36914879 PMCID:PMC1001158
• Filipovic D, Qi W, Kana O, Marri D, LeCluyse EL, Andersen ME, Cuddapah S, Bhattacharya S. 2023. Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue-specific binding determinants. Toxicol Sci 196(2):170-186. doi:10.1093/toxsci/kfad094 PMID:37707797 PMCID:PMC10682972
• Ivanovski I, Zylstra GJ. 2023. Genetic and functional characterization of a salicylate 1-monooxygenase located on an integrative and conjugative element (ICE) in pseudomonas stutzeri AJR13. Journal of Microbiology 61(12):1025-1032. doi:10.1007/s12275-023-00093-x PMID:38100000
• Jurgelewicz A, Nault R, Harkema JR, Zacharewski TR, LaPres JJ. 2023. Characterizing the impact of simvastatin co-treatment of cell specific TCDD-induced gene expression and systemic toxicity. Sci Rep 13(1):16598. doi:10.1038/s41598-023-42972-8 PMID:37789023 PMCID:PMC10547718
• Khan DI, Karmaus P, Bach A, Crawford RB, Kaminski NE. 2023. An in vitro model of human hematopoiesis identifies a regulatory role for the aryl hydrocarbon receptor. Blood Adv doi:10.1182/bloodadvances.2023010169 PMID:37477592
• Kumbale CM, Zhang Q, Voit EO. 2023. Hepatic cholesterol biosynthesis and dioxin-induced dysregulation: A multiscale computational approach. Food Chem Toxicol 181:114086. doi:10.1016/j.fct.2023.114086 PMID:37820785
• Nault R, Cave MC, Ludewig G, Moseley HN, Pennell KG, Zacharewski TR. 2023. A case for accelerating standards to achieve the FAIR principles of environmental health research experimental data. Environ Health Perspect 131(6):65001. doi:10.1289/EHP11484 PMID:37352010 PMCID:PMC10289218
• Orlowska K, Fling RR, Nault R, Schilmiller AL, Zacharewski TR. 2023. Cystine/glutamate Xc- antiprorter induction compensates for transsulfuration pathway repression by 2,3,7,8-tetrachlorodibenzo- p-dioxin (TCDD) to ensure cysteine for heptic glutathione biosynthesis. Chem Res Toxicol 36(6):900-915. doi:10.1021/acs.chemrestox.3c00017 PMID:37184393 PMCID:PMC10284067
• Rance N. 2023. How single-cell transcriptomics provides insight on hepatic responses to TCDD. Curr Opin Toxicol 36:100441. doi:10.1016/j.cotox.2023.100441 PMID:37981901 PMCID:PMC10653208
• Steidmann MM, Liu J, Bayes K, Castro LP, Ferguson-Miller S, LaPres JJ. 2023. Evidence for crosstalk between the aryl hydrocarbon receptor and the translocator protein in mouse lung epithelial cells. Exp Cell Res 429(1):113617. doi:10.1016/j.yexcr.2023.113617 PMID:37172753 PMCID:PMC10330775
• Yu K, Lv Y, Liu C, Boyd SA, Teppen BJ, Li H. 2023. Reaction of decabromodiphenyl ether with organo-modified clay-templated zero-valent iron in water-tetrahydrofuran solution: Nano- to micrometric scale effects. J Hazard Mater 445:130538. doi:10.1016/j.jhazmat.2022.130538

2022

• Cholico G, Nault R, Zacharewski TR. 2022. Genome-wide ChIPseq analysis of AhR, COUP-TF, and HNF4 enrichment in TCDD-treated mouse liver. Int J Mol Sci 23(3):1558. doi:10.3390/ijms23031558 PMID:35163483 PMCID:PMC8836158
• Jing L, Zhang Q. 2022. Intrathyroidal feedforward and feedback network regulating thyroid hormone synthesis and secretion. Front. Endocrinol 13:992883. doi:10.3389/fendo.2022.992883 PMID:36187113 PMCID:PMC9519864
• Liu R, Zacharewski TR, Conolly RB, Zhang Q. 2022. A physiologically based pharmacokinetic (PBPK) modeling framework for mixtures of dioxin-like compounds. Toxics 10(11):700. doi:10.3390/toxics10110700 PMID:36422908 PMCID:PMC9698634
• Liu S, Pi J, Zhang Q. 2022. Signal amplification in the KEAP1-NRF2-ARE antioxidant response pathway. Redox Biol 54:102389. doi:10.1016/j.redox.2022.102389 PMID:35792437 PMCID:PMC9287733
• Nault R, Saha S, Bhattacharya S, Dodson J, Sinha S, Maiti T, Zacharewski TR. 2022. Benchmarking of a Bayesian single cell RNAseq differential gene expression test for dose-response study designs. Nucleic Acids Res doi:10.1093/nar/gkac019 PMID:35061903
• Nault R, Saha S, Bhattacharya S, Sinha S, Maiti T, Zacharewski TR. 2022. Single cell transcriptomics shows dose-dependent disruption of hepatic zonation by TCDD in mice. Toxicol Sci doi:10.1093/toxsci/kfac109 PMID:36222588
• Orlowska K, Fling RR, Nault R, Sink WJ, Schilmiller AL, Zacharewski TR. 2022. Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the beta-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup. J Biol Chem 298(9):102301. doi:10.1016/j.jbc.2022.102301 PMID:35931118 PMCID:PMC9418907
• Shi Z, Xia M, Xiao S, Zhang Q. 2022. Identification of nonmonotonic concentration-responses in Tox21 high-throughput screening estrogen receptor assays. Toxicol Appl Pharmacol 452:116206. doi:10.1016/j.taap.2022.116206 PMID:35988584 PMCID:PMC9452481
• Zhou J, Blevins L, Crawford RB, Kaminski NE. 2022. Role of programmed cell death protein-1 and lymphocyte specific protein tyrosine kinase in the aryl hydrocarbon receptor- mediated impairment of the IgM response in human CD5(+) innate-like B cells. Front Immunol doi:10.3389/fimmu.2022.884203 PMID:35558082 PMCID:PMC9088000

2021

• Almnehlawi HS, Zylstra GJ, Dean RK, Capozzi SL, Rodenburg LA, Fennell DE. 2021. Agromyces and Arthrobacter isolates from surficial sediments of the Passaic River degrade dibenzofuran, dibenzo-p-dioxin and 2-monochlorodibenzo-p-dioxin. Bioremediat J 21:doi:10.1080/10889868.2021.1892027
• Blevins L, Zhou J, Crawford RB, Kaminski NE. 2021. Identification of a sensitive human immunological target of aryl hydrocarbon receptor activation: CD5+ innate-like B cells. Front Immunol 12:635748. doi:10.3389/fimmu.2021.635748 PMID:33936048 PMCID:PMC8082145
• Cholico G, Fling RR, Zacharewski TR, Zacharewski N, Fader KA, Nault R. 2021. Thioesterase induction by 2,3,7,8-tetrachlorodibenzo-p-dioxin results in a futile cycle that inhibits hepatic beta-oxidation. Sci Rep 11:15689. doi:10.1038/s41598-021-95214-0 PMID:34344994 PMCID:PMC8333094
• Fling RR, Zacharewski TR. 2021. Aryl hydrocarbon receptor (AhR) activation by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) dose-dependently shifts the gut microbiome consistent with the progression of non-alcoholic fatty liver disease. Int J Mol Sci 22(22):12431. doi:10.3390/ijms222212431 PMID:34830313 PMCID:PMC8625315
• Gingrich J, Filipovic D, Conolly RB, Veiga-Lopez A. 2021. Pregnancy-specific physiologically-based toxicokinetic models for bisphenol A and bisphenol S. Environ Int 147:106301. doi:10.1016/j.envint.2020.106301 PMID:33360411 PMCID:PMC7856209
• Kumbale CM, Voit EO, Zhang Q. 2021. Emergence and enhancement of ultrasensitivity through posttranslational modulation of protein stability. Biomolecules 11(11):1741. doi:10.3390/biom11111741 PMID:34827739 PMCID:PMC8615576
• Liu S, Pi J, Zhang Q. 2021. Mathematical modeling reveals quantitative properties of KEAP1-NRF2 signaling. Redox Biol 47:doi:10.1016/j.redox.2021.102139 PMID:34600335 PMCID:PMC8531862
• Mutter TY, Zylstra GJ. 2021. Differential roles of three different upper pathway meta ring cleavage product hydrolases in the degradation of dibenzo-p-dioxin and dibenzofuran by Sphingomonas wittichii strain RW1. Appl Environ Microbiol 87:doi:10.1128/AEM.01067-21 PMID:34469199 PMCID:PMC8552877
• Mutter TY, Zylstra GJ. 2021. Separate upper pathway ring cleavage dioxygenases are required for growth of Sphingomonas wittichii strain RW1 on dibenzofuran and dibenzo-p-dioxin. Appl Environ Microbiol 87:doi:10.1128/AEM.02464-20 PMID:33741618
• Nault R, Fader KA, Zacharewski TR. 2021. Single-nuclei RNA sequencing assessment of the hepatic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin. Cell Mol Gastroenterol Hepatol 11:147-159. doi:10.1016/j.jcmgh.2020.07.012 PMID:32791302 PMCID:PMC7674514
• Olivero-Verbal J, Harkema JR, Roth RA, Ganey PE. 2021. Fenofibrate, a peroxisome proliferator-activated receptor-alpha agonist, blocks steatosis and alters the inflammatory response in a mouse model of inflammation-dioxin interaction. Chem Biol Interact 345:PMID:34052195
• Tu Y, Premachandra GS, Boyd SA, Sallach JB, Li H, Teppen BJ, Johnston CT. 2021. Synthesis and evaluation of Fe(3)O(4)-impregnated activated carbon for dioxin removal. Chemosphere 263:128263. doi:10.1016/j.chemosphere.2020.128263 PMID:33297207 PMCID:PMC7733032
• Warren M, Radulescu A, Dornbos P, Cuomo D, Zumwalt S, Bueso-Mendoza D, Nitcher M, LaPres JJ, Threadgill DW. 2021. Peanut butter as an alternative dose delivery method to prevent strain-dependent orogastric gavage-induced stress in mouse teratogenicity studies. J Pharmacol Toxicol Methods 107:106948. doi:10.1016/j.vascn.2020.106948 PMID:33387613
• Williams MR, Stedtfeld RD, Stedtfeld TM, Crawford RB, Kuwahara T, Kaminski NE, Tiedje JM, Hashsham SA. 2021. MicroRNA-based host response to toxicant exposure is influenced by the presence of gut microbial populations. Sci Total Environ 797:doi:10.1016/j.scitotenv.2021.149130 PMID:34311349 PMCID:PMC8464502
• Yuan Q, Sallach JB, Rhodes G, Bach A, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE, Boyd SA. 2021. Natural organic matter does not diminish the mammalian bioavailability of 2,3,7,8-tetrachlorodibenzo-p-dioxin. Chemosphere 264(Pt1):128420. doi:10.1016/j.chemosphere.2020.128420 PMID:33032214 PMCID:PMC7749823 (ahead of print)

2020

• Blevins L, Zhou J, Crawford RB, Kaminski NE. 2020. TCDD-mediated suppression of naive human B cell IgM secretion involves aryl hydrocarbon receptor-mediated reduction in STAT3 serine 727 phosphorylation and is restored by interferon-y. Cell Signal 65:109447. doi:10.1016/j.cellsig.2019.109447 PMID:31678681 PMCID:PMC6903688
• Chai B, Tsoi TV, Sallach JB, Liu C, Landgraf J, Bezdek M, Zylstra GJ, Li H, Johnston CT, Teppen BJ, Cole JR, Boyd SA, Tiedje JM. 2020. Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. Sci Total Environ 712:135525. doi:10.1016/j.scitotenv.2019.135525 PMID:32050392
• Dornbos P, Arkatkar A, LaPres JJ. 2020. An automated method to predict mouse gene and protein sequences using variant data. G3 (Bethesda) 10(3):925-932. doi:10.1534/g3.119.400983 PMID:31911484 PMCID:PMC7056971
• Doskey CM, Fader KA, Nault R, Lydic TA, Matthews J, Potter D, Sharratt B, Williams K, Zacharewski TR. 2020. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) alters hepatic polyunsaturated fatty acid metabolism and eicosanoid biosynthesis in female Sprague-Dawley rats. Toxicol Appl Pharmacol 398:14. doi:10.1016/j.taap.2020.115034 PMID:32387183 PMCID:PMC7294678
• Fling RR, Doskey CM, Fader KA, Nault R, Zacharewski TR. 2020. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) dysregulates hepatic one carbon metabolism during the progression of steatosis to steatohepatitis with fibrosis in mice. Sci Rep 10:14831. doi:10.1038/s41598-020-71795-0 PMID:32908189 PMCID:PMC7481292

2019

• Cox J, Chung M, Hamm JA, Zwickle A, Cruz S, Dearing J. 2019. Working with institutional stakeholders: Propositions for alternative approaches to community engagement. Int J Environ Res Public Health 16:4010. doi:10.3390/ijerph16204010 PMID:31635112 PMCID:PMC6844076
• Cruz S. 2019. Themes across new directions in community engagement. Int J Environ Res Public Health 16:3724. doi:10.3390/ijerph16193724 PMID:31623297 PMCID:PMC6801676
• Davis JD, Kumbale CM, Zhang Q, Voit EO. 2019. Dynamical systems approaches to personalized medicine. Curr Opin Biotechnol 58:168-174. doi:10.1016/j.copbio.2019.03.005 PMID:30978644 PMCID:PMC7050596
• Dearing J. 2019. Scaling up solutions to toxic contamination in communities. Int J Environ Res Public Health 16(3):doi:10.3390/ijerph16173034 PMID:31443335 PMCID:PMC6747373
• Dornbos P, Jurgelewicz A, Fader KA, Williams K, Zacharewski TR, LaPres JJ. 2019. Characterizing the role of HMG-CoA reductase in aryl hydrocarbon receptor-mediated liver injury in C57BL/6 mice. Sci Rep 9(1):15828. doi:10.1038/s41598-019-52001-2 PMID:31676775 PMCID:PMC6825130
• Fader KA, Nault R, Doskey CM, Fling RR, Zacharewski TR. 2019. 2,3,7,8-Tetrachlorodibenzo-p-dioxin abolishes circadian regulation of hepatic metabolic activity in mice. Sci Rep 9:6514. doi:10.1038/s41598-019-42760-3 PMID:31015483 PMCID:PMC6478849
• Gao F, Hirn M, Perlmutter M, Wolf G. 2019. Geometric wavelet scattering on graphs and manifolds. Wavelets and Sparsity Xviii doi:10.1117/12.2529615
• Guo J, Quensen JF, Sun Y, Wang Q, Brown C, Cole JR, Tiedje JM. 2019. Review, evaluation, and directions for gene-targeted assembly for ecological analyses of metagenomes. Front Genet 10:doi:10.3389/fgene.2019.00957 PMID:31749830 PMCID:PMC6843070
• Hamm JA, Cox J, Zwickle A, Zhuang J, Cruz S, Upham BL, Chung M, Dearing J. 2019. Trust in whom? Dioxin, organizations, risk perception, and fish consumption in Michigan's Saginaw Bay watershed. J Risk Research 22:1624-1637. doi:10.1080/13669877.2018.1501599 PMID:32336934 PMCID:PMC7182128
• Josyula N, Andersen ME, Kaminski NE, Dere E, Zacharewski TR, Bhattacharya S. 2019. Gene co-regulation and co-expression in the aryl hydrocarbon receptor-mediated transcriptional regulatory network in the mouse liver. Arch Toxicol 94:113-126. doi:10.1007/s00204-019-02620-5 PMID:31728591
• Sallach JB, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE, Boyd SA. 2019. Activated carbons of varying pore structure eliminate the bioavailability of 2,3,7,8-tetrachlorodibenzo-p-dioxin to a mammalian (mouse) model. Sci Total Environ 650:2231-2238. doi:10.1016/j.scitotenv.2018.09.270
• Williams M, Hashsham SA. 2019. Direct or DNA extraction-free amplification and quantification of foodborne pathogens. Methods Mol Biol 1918:21-33. doi:10.1007/978-1-4939-9000-9_2
• Zhang Q, Caudle W, Pi J, Bhattacharya S, Andersen ME, Kaminski NE, Conolly RB. 2019. Embracing systems toxicology at single-cell resolution. Curr Opin Toxicol 16:49-57. doi:10.1016/j.cotox.2019.04.003 PMID:31768481 PMCID:PMC6876623
• Zhuang J, Cox JG, Chung M, Hamm JA, Zwickle A, Upham BL. 2019. Risk, stigma, trustworthiness, and citizen participation a multifaceted analysis of media coverage of dioxin contamination in Midland, Michigan. Int J Environ Res Public Health 16:4165. doi:10.3390/ijerph16214165 PMID:31671717 PMCID:PMC6862584
• Zwickle A, Cox JG, Hamm JA, Upham BL, Chung M, Cruz S, Dearing J. 2019. The Effect of Dioxin Contamination and Remediation on Property Values. Int J Environ Res Public Health 16:4010. doi:10.3390/ijerph16203900 PMID:31618820 PMCID:PMC6843844

2018

• Dornbos P, LaPres JJ. 2018. Incorporating population-level genetic variability within laboratory models in toxicology: From the individual to the population. Toxicology 395:1-8. doi:10.1016/j.tox.2017.12.007 PMID:29275117 PMCID:PMC5801153
• Dornbos P, Warren M, Crawford RB, Kaminski NE, Threadgill DW, LaPres JJ. 2018. Characterizing Serpinb2 as a modulator of TCDD-induced suppression of the B cell. Chem Res Toxicol 31(11):1248-1259. doi:10.1021/acs.chemrestox.8b00225 PMID:30339366 (ahead of print)
• Fader KA, Nault R, Raehtz S, McCabe LR, Zacharewski TR. 2018. 2,3,7,8-Tetrachlorodibenzo-p-dioxin dose-dependently increases bone mass and decreases marrow adiposity in juvenile mice. Toxicol Appl Pharmacol 348:85-98. doi:10.1016/j.taap.2018.04.013 PMID:29673856 PMCID:PMC5984050
• Fu H, Wei C, Qu X, Li H, Zhu D. 2018. Strong binding of apolar hydrophobic organic contaminants by dissolved black carbon released from biochar: a mechanism of pseudomicelle partition and environmental implications. Environ Pollut 232:402-410. doi:10.1016/j.envpol.2017.09.053 PMID:28966024
• Goodman JI. 2018. Goodbye to the bioassay. Toxicol Res (Camb) 7(4):558-564. doi:10.1039/c8tx00004b PMID:30090606 PMCID:PMC606236
• Liu C, Chu W, Li H, Boyd SA, Teppen BJ, Mao J, Lehmann J, Zhang W. 2018. Quantification and characterization of dissolved organic carbon from biochars. Geoderma 335:161-169. doi:10.1016/j.geoderma.2018.08.019
• Nault R, Doskey CM, Fader KA, Rockwell CE, Zacharewski TR. 2018. Comparison of hepatic NRF2 and aryl hydrocarbon receptor binding in 2,3,7,8-tetrachlorodibenzo-p-dioxin-treated mice demonstrates NRF2-independent PKM2 induction. Mol Pharmacol 94(2):876-884. doi:10.1124/mol.118.112144 PMID:29752288 PMCID:6022803
• Peng A, Gao J, Chen Z, Wang Y, Li H, Ma LQ, Gu C. 2018. Interactions of gaseous 2-chlorophenol with Fe3+-saturated montmorillonite and their toxicity to human lung cells. Environ Sci Technol 52(9):5208-5217. doi:10.1021/acs.est.7b06664 PMID:29613777
• Stedtfeld RD, Guo X, Stedtfeld TM, Sheng H, Williams MR, Hauschild K, Gunturu S, Tift L, Wang F, Howe A, Chai B, Yin D, Cole JR, Tiedje JM, Hashsham SA. 2018. Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements. FEMS Microbiol Ecol 94(9):8. doi:10.1093/femsec/fiy130 PMID:52926
• Waseem H, Williams M, Stedtfeld RD, Stedtfeld TM, Shanker R, Hashsham SA. 2018. Organ-on-chip systems: an emerging platform for toxicity screening of chemicals, pharmaceuticals, and nanomaterials. Chem Sci 8:203-231. doi:10.1039/9781782623922-00203
• Waseem H, Williams MR, Stedtfeld RD, Stedtfeld TM, Shanker R, Hashsham SA. 2018. Organ-on-chip systems: an emerging platform for toxicity screening of chemicals, pharmaceuticals, and nanomaterials. Chapter 8 in: Nanotoxicology: Experimental and Computational Perspectives. The Royal Society of Chemistry, United Kingdom. pp.203-231.
• Zhang Q, Li J, Middleton A, Bhattacharya S, Conolly RB. 2018. Bridging the data gap from in vitro toxicity testing to chemical safety assessment through computational modeling. Front Public Health 6:261. doi:10.3389/fpubh.2018.00261 PMID:30255008 PMCID:PMC6141783
• Zhang S, Liu Q, Cheng H, Gao F, Liu C, Teppen BJ. 2018. Mechanism responsible for intercalation of dimethyl sulfoxide in kaolinite: Molecular dynamics simulations. Appl Clay Sci 151:46-53. doi:10.1016/j.clay.2017.10.022 PMID:29545655 PMCID:PMC5846688
• Zhang S, Liu Q, Gao F, Ma R, Wu Z, Teppen BJ. 2018. Interfacial structure and interaction of kaolinite intercalated with N-methylformamide: insight from molecular dynamics modeling. Appl Clay Sci 158:204-210. doi:10.1016/j.clay.2018.03.032 PMID:30364591 PMCID:PMC6197067
• Zhang S, Liu Q, Gao F, Teppen BJ. 2018. Molecular dynamics simulation of basal spacing, energetics, and structure evolution of a kaolinite-formamide intercalation complex and their interfacial interaction. Journal of Physical Chemistry C 122:3341-3349. doi:10.1021/acs.jpcc.7b10234 PMID:29657662 PMCID:PMC5896007
• Zhang Y, Boyd SA, Teppen BJ, Tiedje JM, Zhang W, Zhu D, Li H. 2018. Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems. Environ Pollut 243(PtB):1078-1086. doi:10.1016/j.envpol.2018.09.059 PMID:30253298
• Zhou J, Henriquez J, Crawford RB, Kaminski NE. 2018. Suppression of the IgM response by aryl hydrocarbon receptor activation in human primary B cells involves impairment of immunoglobulin secretory processes. Toxicol Sci 163(1):doi:10.1093/toxsci/kfy036 PMID:29462421 (ahead of print)
• Zhou J, Zhang Q, Henriquez J, Crawford RB, Kaminski NE. 2018. Lymphocyte-specific protein tyrosine kinase (LCK) is involved in the aryl hydrocarbon receptor-mediated impairment of immunoglobulin secretion in human primary B cells. Toxicol Sci 165(2):322-334. doi:10.1093/toxsci/kfy133 PMID:29860352

2017

• Ahmad F, Stedtfeld RD, Waseem H, Williams MR, Cupples AM, Tiedje JM, Hashsham SA. 2017. Most probable number - loop mediated isothermal amplification (MPN-LAMP) for quantifying waterborne pathogens in <25min. J Microbiol Methods 132:27-33. doi:10.1016/j.mimet.2016.11.010 PMID:27856278 PMCID:PMC5195917
• Ahn E, Choi KY, Kang BS, Zylstra GJ, Kim D, Kim E. 2017. Salicylate degradation by a cold-adapted Pseudomonas sp. Ann Microbiol 67(6):417-424.
• Boyd SA, Sallach JB, Zhang Y, Crawford RB, Li H, Johnston CT, Teppen BJ, Kaminski NE. 2017. Sequestration of 2,3,7,8-tetrachlorodibenzo-p-dioxin by activated carbon eliminates bioavailability and the suppression of immune function in mice. Environ Toxicol Chem 36(10):2671-2678. doi:10.1002/etc.3815 PMID:28370362
• Clemente J, Beauchemin S, MacKinnon T, Martin J, Johnston CT, Joern B. 2017. Initial biochar properties related to the removal of As, Se, Pb, Cd, Cu, Ni, and Zn from an acidic suspension. Chemosphere 170:216-224. doi:10.1016/j.chemosphere.2016.11.154 PMID:28006756
• Fader KA, Nault R, Kirby MP, Markous G, Matthews J, Zacharewski TR. 2017. Convergence of hepcidin defiency, systemic iron overloading, heme accumulation, and REV-ERBalpha/beta activation in aryl hydrocarbon receptor-elicited hepatotoxicity. Toxicol Appl Pharmacol 321:1-17. doi:10.1016/j.taap.2017.02.006 PMID:28213091
• Fader KA, Nault R, Kumagai K, Harkema JR, Zacharewski TR, Zhang C. 2017. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD)-elicited effects on bile acid homeostasis: Alterations in biosynthesis, enterohepatic circulation, and microbial metabolism. Sci Rep 7:5921. doi:10.1038/s41598-017-05656-8 PMID:28725001 PMCID:PMC5517430
• Fader KA, Zacharewski TR. 2017. Beyond the Aryl Hydrocarbon Receptor: Pathway Interactions in the Hepatotoxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin and Related Compounds. Curr Opin Toxicol 2:36-41. doi:10.1016/j.cotox.2017.01.010 PMID:28948239 PMCID:PMC5609723
• Henriquez J, Zhou J, Li J, Crawford RB, Kaminski NE. 2017. Application of gene specific mRNA level determinations in individual cells using flow cytometry-based PrimeFlow (TM) in immunotoxicology. Toxicol Appl Pharmacol 337:39-44. doi:10.1016/j.taap.2017.10.021 PMID:29107001 PMCID:PMC5718209
• Jagannathan L, Jose CC, Tanwar VS, Bhattacharya S, Cuddapah S. 2017. Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells. Toxicol Res (Camb) 6(3):312-323. doi:10.1039/C6TX00432F PMID:29057067 PMCID:PMC5648359
• Kovalova N, Nault R, Crawford RB, Zacharewski TR, Kaminski NE. 2017. Comparative analysis of TCDD-induced AhR-mediated gene expression in human, mouse and rat primary B cells. Toxicol Appl Pharmacol 316:95-106. doi:10.1016/j.taap.2016.11.009 PMID:27913140 PMCID:PMC5292778
• Li J, Bhattacharya S, Zhou J, Phadnis-Moghe AS, Crawford RB, Kaminski NE. 2017. Aryl hydrocarbon receptor activation suppresses EBF1 and PAX5 and impairs human B lymphopoiesis. J Immunol 199:3504-3515. doi:10.4049/jimmunol.1700289 PMID:28978690 PMCID:PMC5679724
• Mumtaz MM, Ruiz P, Zhang Q. 2017. Computational tools for chemical toxicity testing and risk assessment under the framework of adverse outcome pathways. Chapter 8 in: Computational Systems Pharmacology and Toxicology. Royal Society of Chemistry, pp.191-208.
• Munir A, Waseem H, Williams MR, Stedtfeld RD, Gulari E, Tiedje JM, Hashsham SA. 2017. Modeling hybridization kinetics of gene probes in a DNA biochip using FEMLAB. Microarrays (Basel) 6(2):9. doi:10.3390/microarrays6020009 PMID:28555058 PMCID:PMC5487956
• Nault R, Fader KA, Lydic TA, Zacharewski TR. 2017. Lipidomic evaluation of aryl hydrocarbon receptor-mediated hepatic steatosis in male and female mice by 2,3,7,8-tetrachlorodibenzo-p-dioxin. Chem Res Toxicol 30(4):1060-1075. doi:10.1021/acs.chemrestox.6b00430 PMID:28238261
• Nault R, Fader KA, Zacharewski TR. 2017. Loss of liver-specific and sexually dimorphic gene expression by aryl hydrocarbon receptor activation in C57BL/6 mice. PLoS One 12:17. doi:10.1371/journal.pone.0184842 PMID:28922406 PMCID:PMC5602546
• Phadnis-Moghe AS, Kaminski NE. 2017. Immunotoxicity testing using human primary leukocytes: an adjunct approach for the evaluation of human risk. Curr Opin Toxicol 3:25-29. doi:10.1016/j.cotox.2017.04.005 PMID:29619412 PMCID:PMC5880284
• Samhan F, Stedtfeld TM, Waseem H, Williams MR, Stedtfeld RD, Hashsham SA. 2017. On-filter direct amplification of Legionella pneumophila for rapid assessment of its abundance and viability. Water Res 121:162-170. doi:10.1016/j.watres.2017.05.028 PMID:28527390
• Schnetzer F, Johnston CT, Premachandra GS, Giraudo N, Schuhmann R, Thissen P, Emmerich K. 2017. Impact of intrinsic structural properties on the hydration of 2:1 layer silicates. ACS Earth Space Chem 1(10):608-620. doi:10.1021/acsearthspacechem.7b00091 PMID:29658010 PMCID:PMC5896019
• Snow DD, Cassada DA, Bartelt-Hunt SL, Li X, D'Alessio M, Levine R, Zhang Y, Sallach JB. 2017. Detection, occurrence and fate of emerging contaminants in agricultural environments. Water Environ Res 89(10):897-920. doi:10.2175/106143015X14338845155101 PMID:26420073
• Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA. 2017. Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner. J Microbiol Methods 139:15-21. doi:10.1016/j.mimet.2017.04.009 PMID:28438642 PMCID:PMC5491306
• Stedtfeld RD, Chai B, Crawford RB, Stedtfeld TM, Williams MR, Xiangwen S, Kuwahara T, Cole JR, Kaminski NE, Tiedje JM, Hashsham SA. 2017. Modulatory influence of segmented filamentous bacteria on transcriptomic response of gnotobiotic mice exposed to TCDD. Front Microbiol 8:12. doi:10.3389/fmicb.2017.01708 PMID:28936204 PMCID:PMC5594080
• Stedtfeld RD, Sallach JB, Crawford RB, Stedtfeld TM, Williams MR, Waseem H, Johnston CT, Li H, Teppen BJ, Kaminski NE, Boyd SA, Tiedje JM, Hashsham SA. 2017. TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal. Appl Microbiol Biotechnol 101:7409-7415. doi:10.1007/s00253-017-8460-9 PMID:28812142
• Stedtfeld RD, Stedtfeld TM, Fader KA, Williams MR, Bhaduri P, Quensen JF, Zacharewski TR, Tiedje JM, Hashsham SA. 2017. TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. FEMS Microbiol Ecol 93:8. doi:10.1093/femsec/fix058 PMID:28475713 PMCID:PMC5458050
• Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae J, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, Tiedje JM, Upham BL, Hashsham SA. 2017. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. J Environ Manage 198:213-220. doi:10.1016/j.jenvman.2017.04.079 PMID:28460328
• Waseem H, Williams MR, Stedtfeld TM, Chai B, Stedtfeld RD, Cole JR, Tiedje JM, Hashsham SA. 2017. Virulence factor activity relationships (VFARs): a bioinformatics perspective. Environ Sci Process Impacts 19(3):247-260. doi:10.1039/c6em00689b PMID:28261716 PMCID:PMC5897045
• Williams MR, Stedtfeld RD, Stedtfeld TM, Tiedje JM, Hashsham SA. 2017. Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device. Biomed Microdevices 19:45. doi:10.1007/s10544-017-0191-2 PMID:28536858
• Williams MR, Stedtfeld RD, Tiedje JM, Hashsham SA. 2017. MicroRNAs-based inter-domain communication between the host and members of the gut microbiome. Front Microbiol 8:10. doi:10.3389/fmicb.2017.01896 PMID:29021788 PMCID:PMC5624305
• Williams MR, Stedtfeld RD, Waseem H, Stedtfeld TM, Upham BL, Khalife WT, Etchebarne B, Hughes M, Tiedje JM, Hashsham SA. 2017. Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices. Analytical Methods 9:1229-1241. doi:10.1039/C6AY03405E PMID:29657581 PMCID:PMC5898395
• Zhang S, Liu Q, Cheng H, Gao F, Liu C, Teppen BJ. 2017. Thermodynamic mechanism and interfacial structure of kaolinite intercalation and surface modification by alkane surfactants with neutral and ionic head groups. Journal of Physical Chemistry C 121:8824-8831. doi:10.1021/acs.jpcc.6b12919 PMID:29657661 PMCID:PMC5896017
• Zhang S, Liu Q, Gao F, Li X, Liu C, Li H, Boyd SA, Johnston CT, Teppen BJ. 2017. Mechanism associated with kaolinite intercalation with urea: combination of infrared spectroscopy and molecular dynamics simulation studies. Journal of Physical Chemistry C 121(1):402-409. doi:10.1021/acs.jpcc.6b10533 PMID:29657660 PMCID:PMC5896021

2016

• Boughner LA, Singh P. 2016. Microbial ecology: where are we now?. Postdoc J 4(11):3-17. doi:10.14304/SURYA.JPR.V4N11.2 PMID:27975077 PMCID:PMC5152758
• Chai B, Tsoi TV, Iwai S, Liu C, Fish JA, Gu C, Johnson TA, Zylstra GJ, Teppen BJ, Li H, Hashsham SA, Boyd SA, Cole JR, Tiedje JM. 2016. Sphingomonas wittichii strain RW1 genome-wide gene expression shifts in response to dioxins and clay. PLoS One 11(6):e0157008. doi:10.1371/journal.pone.0157008 PMID:27309357 PMCID:PMC4911050
• Dornbos P, Crawford RB, Kaminski NE, Hession SL, LaPres JJ. 2016. The influence of human interindividual variability on the low-dose region of dose-response curve induced by 2,3,7,8-tetrachlorodibenzo-p-dioxin in primary B cells. Toxicol Sci 153(2):352-360. doi:10.1093/toxsci/kfw128 PMID:27473338 PMCID:PMC5036619
• Gibson C, Berry TD, Wang R, Spencer JA, Johnston CT, Jiang Y, Bird JA, Filley TR. 2016. Weathering of pyrogenic organic matter induces fungal oxidative enzyme response in single culture inoculation experiments. Organic Geochemistry 92:32-41. doi:10.1016/j.orggeochem.2015.12.003
• Haoting T, Gao J, Li H, Boyd SA, Gu C. 2016. Complete defluorination of perfluorinated compounds by hydrated electrons generated from 3-indole-acetic-acid in organomodified montmorillonite. Sci Rep 6:32949. doi:10.1038/srep32949 PMID:27608658 PMCID:PMC5017190
• Hwang HJ, Dornbos P, LaPres JJ. 2016. Data on AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin. Data Brief 8:191-195. doi:10.1016/j.dib.2016.05.023 PMID:27331086 PMCID:PMC4898910
• Hwang HJ, Dornbos P, Steidemann M, Dunivin TK, Rizzo M, LaPres JJ. 2016. Mitochondrial-targeted aryl hydrocarbon receptor and the impact of 2,3,7,8-tetrachlorodibenzo-p-dioxin on cellular respiration and the mitochondrial proteome. Toxicol Appl Pharmacol 304:121-132. doi:10.1016/j.taap.2016.04.005 PMID:27105554 PMCID:PMC4930739
• Hwang HJ, Steidemann M, Dunivin TK, Rizzo M, LaPres JJ. 2016. Data of enzymatic activities of the electron transport chain and ATP synthase complexes in mouse hepatoma cells following exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Data Brief 8:93-97. doi:10.1016/j.dib.2016.05.018 PMID:27284569 PMCID:PMC4887554
• Johnston CT. 2016. Biochar analysis by fourier transform infrared analysis. Chapter 12 in: Methods of Biochar Analysis. CSIRO, Collingwood, Australia.
• Kovalova N, Manzan MA, Crawford RB, Kaminski NE. 2016. Role of aryl hydrocarbon receptor polymorphisms on TCDD-mediated CYP1B1 induction and IgM suppression by human B cells. Toxicol Appl Pharmacol 309:15-23. doi:10.1016/j.taap.2016.08.011 PMID:27535091 PMCID:PMC5035641
• Liu C, Chuang Y, Li H, Teppen BJ, Boyd SA, Gonzalez J, Johnston CT, Lehmann J, Zhang W. 2016. Sorption of lincomycin by manure-derived biochars from water. J Environ Qual 45(2):519-527. doi:10.2134/jeq2015.06.0320 PMID:27065399
• Masek O, Johnston CT. 2016. Thermal analysis for biochar characterization. Chapter 14 in: Methods of Biochar Analysis. CSIRO, Collingwood, Australia.
• Nault R, Fader KA, Ammendolia DA, Dornbos P, Potter D, Sharratt B, Kumagai K, Harkema JR, Lunt SY, Matthews J, Zacharewski TR. 2016. Dose-dependent metabolic reprogramming and differential gene expression in TCDD-elicited hepatic fibrosis. Toxicol Sci 154(2):253-266. doi:10.1093/toxsci/kfw163 PMID:27562557 PMCID:PMC5139066
• Nault R, Fader KA, Kirby MP, Ahmed S, Matthews J, Jones AD, Lunt SY, Zacharewski TR. 2016. Pyruvate kinase isoform switching and hepatic metabolic reprogramming by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci 149(2):358-371. doi:10.1093/toxsci/kfv245 PMID:26582802 PMCID:PMC4900217
• Nault R, Fader KA, Kopec AK, Harkema JR, Zacharewski TR, Luyendyk J. 2016. From the cover: coagulation-driven hepatic fibrosis requires protease activated receptor-1 (PAR-1) in a mouse model of TCDD-elicited steatohepatitis. Toxicol Sci 154(2):381-391. doi:10.1093/toxsci/kfw175 PMID:27613713 PMCID:PMC5139072
• Phadnis-Moghe AS, Li J, Crawford RB, Kaminski NE. 2016. SHP-1 is directly activated by the aryl hydrocarbon receptor and regulates BCL-6 in the presence of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Toxicol Appl Pharmacol 310:41-50. doi:10.1016/j.taap.2016.08.014 PMID:27546522 PMCID:PMC5064869
• Putthividhya A, Kukor JJ, Abriola LM. 2016. The effects of substrate exposure history and carbon starvation-induced stress on the EPS synthesis of TCE degrading toluene oxidizing soil bacteria. Environ Earth Sci 75:775. doi:10.1007/s12665-015-5080-5
• Singh B, Fang Y, Johnston CT. 2016. A fourier-transform infrared study of biochar aging in soils. Soil Science Society of America Journal 80:613-622. doi:10.2136/sssaj2015.11.0414
• Stedtfeld RD, Stedtfeld TM, Samhan F, Kanitkar YH, Hatzinger PB, Cupples AM, Hashsham SA. 2016. Direct loop mediated isothermal amplification on filters for quantification of Dehalobacter in groundwater. J Microbiol Methods 131:61-67. doi:10.1016/j.mimet.2016.09.025 PMID:27720723
• Stedtfeld RD, Williams M, Fakher U, Johnson TA, Stedtfeld TM, Wang F, Khalife WT, Hughes M, Etchebarne B, Tiedje JM, Hashsham SA. 2016. Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens. FEMS Microbiol Ecol 92(3):doi:10.1093/femsec/fiw020 PMID:26850162
• Wang F, Stedtfeld RD, Kim O, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, Tiedje JM, Sul WJ. 2016. Influence of soil characteristics and proximity to Antarctic research stations on abundance of antibiotic resistance genes in soils. Environ Sci Technol 50(23):12621-12629. doi:10.1021/acs.est.6b02863 PMID:27797533
• Williams MR, Stedtfeld RD, Guo X, Hashsham SA. 2016. Antimicrobial resistance in the environment. Water Environ Res 88(10):1951-1967. doi:10.2175/106143016X14696400495974 PMID:27620115
• Zhuang J, Cox J, Cruz S, Dearing J, Hamm JA, Upham BL. 2016. Environmental stigma: Resident responses to living in a contaminated area. Am Behav Sci 60(11):1322-1341. doi:10.1177/0002764216657381 PMID:29628516 PMCID:PMC5884163

2015

• Ambrose KV, Tian Z, Wang Y, Smith J, Zylstra GJ, Huang B, Belanger FC. 2015. Functional characterization of salicylate hydroxylase from the fungal endophyte Epichloe festucae. Sci Rep 5:10939. doi:10.1038/srep10939 PMID:26055188 PMCID:PMC4460724
• Fader KA, Nault R, Ammendolia DA, Harkema JR, Williams KJ, Crawford RB, Kaminski NE, Potter D, Sharratt B, Zacharewski TR. 2015. 2,3,7,8-Tetrachlorodibenzo-p-dioxin alters lipid metabolism and depletes immune cell populations in the jejunum of C57BL/6 mice. Toxicol Sci 148(2):567-580. doi:10.1093/toxsci/kfv206 PMID:26377647 PMCID:PMC5009443
• Kostic T, Ellis M, Kronlein M, Stedtfeld TM, Kaneene J, Hashsham SA, Stedtfeld RD. 2015. Thirty-minute screening of antibiotic resistance genes in bacterial isolates with minimal sample preparation in static self-dispensing 64 and 384 assay cards. Appl Microbiol Biotechnol 99(18):7711-7722. doi:10.1007/s00253-015-6774-z PMID:26227406 PMCID:PMC4543423
• Liu C, Gu C, Yu K, Li H, Teppen BJ, Johnston CT, Boyd SA, Zhou D. 2015. Integrating structural and thermodynamic mechanisms for sorption of PCBs by montmorillonite. Environ Sci Technol 49(5):2796-2805. doi:10.1021/es505205p PMID:25629399
• Nault R, Colbry D, Brandenberger C, Zacharewski TR, Harkema JR. 2015. Development of a computational high-throughput tool for the quantitative examination of dose-dependent histological features. Toxicol Pathol 43(3):366-375. doi:10.1177/0192623314544379 PMID:25274660 PMCID:PMC4382446
• Nault R, Fader KA, Zacharewski TR. 2015. RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice. BMC Genomics 16:373. doi:10.1186/s12864-015-1527-z PMID:25958198 PMCID:PMC4456707
• Phadnis AS, Crawford RB, Kaminski NE. 2015. Suppression of human B cell activation by 2,3,7,8-tetrachlorodibenzo-p-dioxin involves altered regulation of B cell lymphoma-6. Toxicol Sci 144(1):39-50. doi:10.1093/toxsci/kfu257 PMID:25543051 PMCID:PMC4349138
• Stedtfeld RD, Liu Y, Stedtfeld TM, Kostic T, Kronlein M, Srivannavit O, Khalife WT, Tiedje JM, Gulari E, Hughes M, Etchebarne B, Hashsham SA. 2015. Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens. Biomed Microdevices 17(5):89. doi:10.1007/s10544-015-9994-1 PMID:26260693 PMCID:PMC4531140
• Tian H, Guo Y, Pan B, Gu C, Li H, Boyd SA. 2015. Enhanced photoreduction of nitro-aromatic compounds by hydrated electrons derived from indole on natural montmorillonite. Environ Sci Technol 49(13):7784-7792. doi:10.1021/acs.est.5b01026 PMID:26029791
• Wang Q, Fish JA, Gilman M, Sun Y, Brown C, Tiedje JM, Cole JR. 2015. Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Microbiome 3:32. doi:10.1186/s40168-015-0093-6 PMID:26246894 PMCID:PMC4526283
• Zhang Q, Bhattacharya S, Clewell RA, Carmichael PL, Andersen ME. 2015. Adaptive posttranslational control in cellular stress response pathways and its relationship to toxicity testing and safety assessment. Toxicol Sci 147(2):302-316. doi:10.1093/toxsci/kfv130 PMID:26408567 PMCID:PMC4707198

2014

• Cole JR, Tiedje JM. 2014. History and impact of RDP: a legacy from Carl Woese to microbiology. RNA Biol 11(3):239-243. doi:10.4161/rna.28306 PMID:24607969 PMCID:PMC4008557
• Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown C, Porras-Alfaro A, Kuske CR, Tiedje JM. 2014. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42(Databaseissue):D633-D642. doi:10.1093/nar/gkt1244 PMID:24288368 PMCID:PMC3965039
• Masuda H, Shiwa Y, Yoshikawa H, Zylstra GJ. 2014. Draft genome sequence of the versatile alkane-degrading bacterium Aquabacterium sp. strain NJ1. Genome Announc 2(6):e01271-14. doi:10.1128/genomeA.01271-14 PMID:25477416 PMCID:PMC4256197
• Ye W, Paul D, Gao L, Seckute J, Sangaiah R, Jayaraj K, Zhang Z, Kaminski P, Ealick SE, Gold A, Ball LM. 2014. Ethenoguanines undergo glycosylation by nucleoside 2'-deoxyribosyltransferases at non-natural sites. PLoS One 9(12):e115082. doi:10.1371/journal.pone.0115082 PMID:25521390 PMCID:PMC4270796
• Zhang Q, Bhattacharya S, Conolly RB, Clewell H, Andersen ME. 2014. Molecular signaling network motifs provide a mechanistic basis for cellular threshold responses. Environ Health Perspect 122(12):1261-1270. doi:10.1289/ehp.1408244 PMID:25117432 PMCID:PMC4256703

2013

• Angrish MM, Dominici CY, Zacharewski TR. 2013. TCDD-elicited effects on liver, serum, and adipose lipid composition in C57BL/6 mice. Toxicol Sci 131(1):108-115. doi:10.1093/toxsci/kfs277 PMID:22977169 PMCID:PMC3537129
• Fish JA, Chai B, Wang Q, Sun Y, Brown C, Tiedje JM, Cole JR. 2013. FunGene: The functional gene pipeline and repository. Front Microbiol 4:291. doi:10.3389/fmicb.2013.00291 PMID:24101916 PMCID:PMC3787254
• Forgacs AL, Dere E, Angrish MM, Zacharewski TR. 2013. Comparative analysis of temporal and dose-dependent TCDD-elicited gene expression in human, mouse, and rat primary hepatocytes. Toxicol Sci 133(1):54-66. doi:10.1093/toxsci/kft028 PMID:23418086 PMCID:PMC3627554
• Kopec AK, Boverhof DR, Nault R, Harkema JR, Tashiro C, Potter D, Sharratt B, Chittim B, Zacharewski TR. 2013. Toxicogenomic evaluation of long-term hepatic effects of TCDD in immature, ovariectomized C57BL/6 mice. Toxicol Sci 135(2):465-475. doi:10.1093/toxsci/kft156 PMID:23864506 PMCID:PMC3807621
• Nault R, Forgacs AL, Dere E, Zacharewski TR. 2013. Comparisons of differential gene expression elicited by TCDD, PCB126, βNF, or ICZ in mouse hepatoma Hepa1c1c7 cells and C57BL/6 mouse liver. Toxicol Lett 223(1):52-59. doi:10.1016/j.toxlet.2013.08.013 PMID:23994337 PMCID:PMC4096832
• Nault R, Kim S, Zacharewski TR. 2013. Comparison of TCDD-elicited genome-wide hepatic gene expression in Sprague-Dawley rats and C57BL/6 mice. Toxicol Appl Pharmacol 267(2):184-191. doi:10.1016/j.taap.2012.11.028 PMID:23238561 PMCID:PMC4104405
• Penton C, Johnson TA, Quensen JF, Iwai S, Cole JR, Tiedje JM. 2013. Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Front Microbiol 4:279. doi:10.3389/fmicb.2013.00279 PMID:24062736 PMCID:PMC3775264
• Rhodes AN, Fulthorpe RR, Tiedje JM. 2013. Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation. Appl Environ Microbiol 79(22):6932-6940. doi:10.1128/AEM.01905-13 PMID:23995940 PMCID:PMC3811530
• Zhang Q, Bhattacharya S, Andersen ME. 2013. Ultrasensitive response motifs: Basic amplifiers in molecular signalling networks. Open Biol 3(4):130031. doi:10.1098/rsob.130031 PMID:23615029 PMCID:PMC3718334
• Zhang Q, Kline DE, Bhattacharya S, Crawford RB, Conolly RB, Thomas RS, Andersen ME, Kaminski NE. 2013. All-or-none suppression of B cell terminal differentiation by environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Appl Pharmacol 268(1):17-26. doi:10.1016/j.taap.2013.01.015 PMID:23357550 PMCID:PMC3594464

2012

• Baushke SW, Stedtfeld RD, Tourlousse DM, Ahmad F, Wick LM, Gulari E, Tiedje JM, Hashsham SA. 2012. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves. J Microbiol Methods 90(1):29-35. doi:10.1016/j.mimet.2012.04.003 PMID:22537822 PMCID:PMC3366151
• Chang H, Zylstra GJ, Chae J. 2012. Genome sequence of n-Alkane-degrading hydrocarboniphaga effusa strain AP 103(T) (ATCC BAA-332(T)). J Bacteriol 194:5120. doi:10.1128/jb.01017-12 PMID:22933753 PMCID:PMC3430359
• Fullerton AM, Roth RA, Ganey PE. 2012. 2,3,7,8-TCDD enhances the sensitivity of mice to concanavalin A immune-mediated liver injury. Toxicol Appl Pharmacol 266(2):317-327. doi:10.1016/j.taap.2012.11.009 PMID:23164664 PMCID:PMC3535831
• Johnston CT, Khan B, Barth EF, Chattopadhyay S, Boyd SA. 2012. Nature of the interlayer environment in an organoclay optimized for the sequestration of dibenzo-p-dioxin. Environ Sci Technol 46(17):9584-9591. doi:10.1021/es300699y PMID:22856528 PMCID:PMC4327870
• Liu C, Hui L, Johnston CT, Boyd SA, Teppen BJ. 2012. Relating clay structural factors to dioxin adsorption by smectites: molecular dynamics simulations. Soil Science Society of America Journal 76:110-120. doi:10.2136/sssaj2010.0450
• Yoo M, Kim D, Choi KY, Chae J, Zylstra GJ, Kim E. 2012. Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp strain DK17. J Bacteriol 194(16):4440. doi:10.1128/JB.00844-12 PMID:22843580 PMCID:PMC3416227
• Yu K, Gu C, Boyd SA, Liu C, Teppen BJ, Li H, Sun C. 2012. Rapid and extensive debromination of decabromodiphenyl ether by smectite clay-templated subnanoscale zero-valent iron. Environ Sci Technol 46(16):8969-8975. doi:10.1021/es300516e PMID:22846063

2011

• Angrish MM, Jones AD, Harkema JR, Zacharewski TR. 2011. Aryl hydrocarbon receptor-mediated induction of stearoyl-CoA desaturase 1 alters hepatic fatty acid composition in TCDD-elicited steatosis. Toxicol Sci 124(2):299-310. doi:10.1093/toxsci/kfr226 PMID:21890736 PMCID:PMC3216411
• Bhattacharya S, Zhang Q, Andersen ME. 2011. Double-negative feedback loops as a common design motif in the transcriptional networks regulating cell fate. International Journal of Design Engineering 4:41-57. doi:10.1504/IJDE.2011.041408
• Boyd SA, Johnston CT, Pinnavaia TJ, Kaminski NE, Teppen BJ, Crawford RB, Kovalova N, Kim SS, Shao H, Gu C, Kaplan BL, Khan B, Li H. 2011. Suppression of humoral immune responses by 2,3,7,8-tetrachlorodibenzo-p-dioxin intercalated in smectite clay. Environ Toxicol Chem 30(12):2748-2755. doi:10.1002/etc.701 PMID:21994089
• De Abrew KN, Phadnis AS, Crawford RB, Kaminski NE, Thomas RS. 2011. Regulation of Bach2 by the aryl hydrocarbon receptor as a mechanism for suppression of B-cell differentiation by 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Appl Pharmacol 252(2):150-158. doi:10.1016/j.taap.2011.01.020 PMID:21296099 PMCID:PMC3106294
• Dere E, Forgacs AL, Zacharewski TR, Burgoon LD. 2011. Genome-wide computational analysis of dioxin response element location and distribution in the human, mouse, and rat genomes. Chem Res Toxicol 24:494-504. doi:10.1021/tx100328r PMID:21370876 PMCID:PMC4038167
• Dere E, Lee AW, Burgoon LD, Zacharewski TR. 2011. Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells. BMC Genomics 12:doi:10.1186/1471-2164-12-193 PMID:21496263 PMCID:PMC3089798
• Dere E, Lo R, Celius T, Matthews J, Zacharewski TR. 2011. Integration of genome-wide computation DRE search, AhR ChIP-chip and gene expression analyses of TCDD-elicited responses in the mouse liver. BMC Genomics 12:365. doi:10.1186/1471-2164-12-365 PMID:21762485 PMCID:PMC3160422
• Gu C, Liu C, Ding Y, Li H, Teppen BJ, Johnston CT, Boyd SA. 2011. Clay mediated route to natural formation of Polychlorodibenzo-p-dioxins. Environ Sci Technol 45(8):3445-3451. doi:10.1021/es104225d PMID:21434682
• Gu C, Liu C, Johnston CT, Teppen BJ, Li H, Boyd SA. 2011. Pentachlorophenol radical cations generated on Fe(III)-montmorillonite initiate octachlorodibenzo-p-dioxin formation in clays: density functional theory and fourier transform infrared studies. Environ Sci Technol 45(4):1399-1406. doi:10.1021/es103324z PMID:21254769 PMCID:PMC3094738
• Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. 2011. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl Environ Microbiol 77:3551-3557. doi:10.1128/aem.00331-11 PMID:21498766 PMCID:PMC3127589
• Jia H, Gu C, Boyd SA, Teppen BJ, Johnston CT, Li H, Song C. 2011. Comparison of reactivity of nanoscaled zero-valent iron formed on clay surfaces. Soil Science Society of America Journal 75(2):357-364. doi:10.2136/sssaj2010.0080nps
• Kaplan BL, Crawford RB, Kovalova N, Arencibia A, Kim S, Pinnavaia TJ, Boyd SA, Teppen BJ, Kaminski NE. 2011. TCDD adsorbed on silica as a model for TCDD contaminated soils: evidence for suppression of humoral immunity in mice. Toxicology 282(3):82-87. doi:10.1016/j.tox.2011.01.013 PMID:21272611 PMCID:PMC3089373
• Kim D, Yoo M, Choi KY, Kang BS, Kim TK, Hong SG, Zylstra GJ, Kim E. 2011. Differential degradation of bicyclics with aromatic and alicyclic rings by Rhodococcus sp strain DK17. Appl Environ Microbiol 77:8280-8287. doi:10.1128/AEM.06359-11 PMID:21965391 PMCID:PMC3233041
• Kopec AK, D'Souza ML, Mets BD, Burgoon LD, Reese SE, Archer KJ, Potter D, Tashiro C, Sharratt B, Harkema JR, Zacharewski TR. 2011. Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2 ',4,4 ',5,5 '-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice. Toxicol Appl Pharmacol 256:154-167. doi:10.1016/j.taap.2011.08.002 PMID:21851831 PMCID:PMC4126514
• Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. 2011. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat. Appl Environ Microbiol 77:3888-3891. doi:10.1128/aem.00023-11 PMID:21498748 PMCID:PMC3127585
• Lo R, Celius T, Dere E, MacPherson L, Harper PA, Zacharewski TR, Matthews J. 2011. Identification of aryl hydrocarbon receptor binding targets in mouse hepatic tissue treated with 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Appl Pharmacol 257:38-47. doi:10.1016/j.taap.2011.08.016 PMID:21889950
• Lu H, Crawford RB, Kaplan BL, Kaminski NE. 2011. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated disruption of the CD40 ligand-induced activation of primary human B cells. Toxicol Appl Pharmacol 255:251-260. doi:10.1016/j.taap.2011.06.026 PMID:21807014 PMCID:PMC3189629
• McClure EA, North CM, Kaminski NE, Goodman JI. 2011. Changes in DNA methylation and gene expression during 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced suppression of the lipopolysaccharide-stimulated IgM response in splenocytes. Toxicol Sci 120(2):339-348. doi:10.1093/toxsci/kfq396 PMID:21212295 PMCID:PMC3061478
• Olivero-Verbal J, Roth RA, Ganey PE. 2011. Dioxin alters inflammatory responses to lipopolysaccharide. Toxicol Sci 93:1180-1194. doi:10.1080/02772248.2011.577554
• Sulentic CE, Kaminski NE. 2011. The long winding road toward understanding the molecular mechanisms for B cell suppression by 2,3,7,8-Tetrachlorodibenzo-p-dioxin. Toxicol Sci 120(suppl1):S171-S191. doi:10.1093/toxsci/kfq324 PMID:20952503 PMCID:PMC3043085
• Yoo M, Zylstra GJ, Kim D, Kang BS, Kim E. 2011. Biphenyl hydroxylation enhanced by an engineered o-xylene dioxygenase from Rhodococcus sp strain DK17. Res Microbiol 162:724-728. doi:10.1016/j.resmic.2011.04.013 PMID:21575716

2010

• Andersen ME, Zhang Q, Bhattacharya S. 2010. Modeling Gene and Protein Expression - Nested Motifs in Cellular and Tissue Response Networks. Chapter 10 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ.
• Bhattacharya S, Conolly RB, Kaminski NE, Thomas RS, Andersen ME, Zhang Q. 2010. A bistable switch underlying B-cell differentiation and its disruption by the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci 115(1):51-65. doi:10.1093/toxsci/kfq035 PMID:20123757 PMCID:PMC2855357
• Bhattacharya S, Zhang Q, Andersen ME. 2010. Bistable Signaling Motifs and Cell Fate Decisions. Chapter 8 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ.
• Boyd SA, Johnston CT, Laird DA, Teppen BJ, Li H. 2010. Comprehensive Study of Organic Contaminant Adsorption by Clays: Methodologies, Mechanisms and Environmental Implications. In: Volume 3, Biophysico-Chemical Processes of Anthropogenic Organic Compounds in Environmental Systems. Wiley, New York, NY.
• Chang H, Zylstra GJ. 2010. Xanthomonads. In: Handbook of Hydrocarbon and Lipid Microbiology. Springer Verlag GmbH, Heidelberg, Germany. pp.1805-1811.
• Crawford RB, Kaminski NE, Lu H, North CM. 2010. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated suppression of toll-like receptor stimulated B-lymphocyte activation and initiation of plasmacytic differentiation. Toxicol Sci 116:99-112. doi:10.1093/toxsci/kfq095 PMID:20348231 PMCID:PMC2886857
• Cummings JA, Clemens LG, Nunez AA. 2010. Mother counts: how effects of environmental contaminants on maternal care could affect the offspring and future generations. Front Neuroendocrinol 31:440-451. doi:10.1016/j.yfrne.2010.05.004 PMID:20685293
• De Abrew KN, Kaminski NE, Thomas RS. 2010. An integrated genomic analysis of aryl hydrocarbon receptor-mediated inhibition of B-cell differentiation. Toxicol Sci 118(2):454-469. doi:10.1093/toxsci/kfq265 PMID:20819909 PMCID:PMC3003543
• De Abrew KN, Kaminski NE, Thomas RS. 2010. Identification of direct AhR-regulated genes involved in B cell differentiation. The Toxicologist 99 (Abst. 1195).
• Forgacs AL, Burgoon LD, Lynn SG, LaPres JJ, Zacharewski TR. 2010. Effects of TCDD on the expression of nuclear encoded mitochondrial genes. Toxicol Appl Pharmacol 246(1-2):58-65. doi:10.1016/j.taap.2010.04.006 PMID:20399798 PMCID:PMC4030424
• Gu C, Jiang H, Li H, Teppen BJ, Boyd SA. 2010. Synthesis of highly reactive subnano-sized zero-valent iron using smectite clay templates. Environ Sci Technol 44(11):4258-4263. doi:10.1021/es903801r PMID:20446730 PMCID:PMC2892840
• Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. 2010. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 4(2):279-285. doi:10.1038/ismej.2009.104 PMID:19776767 PMCID:PMC2808446
• Johnston CT. 2010. Probing the nanoscale architecture of clay minerals. Clays and Clay Minerals 45:245-279. doi:10.1180/claymin.2010.045.3.245
• Kline DE, Zhang Q, Bhattacharya S, Andersen ME, Conolly RB, Crawford RB, Kaminski NE. 2010. 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) Suppresses LPS-activated Binary Switching of B Cells to Plasma Cells.
• Kopec AK, Burgoon LD, Ibrahim-Aibo D, Burg AR, Lee AW, Tashiro C, Sharratt B, Harkema JR, Rowlands C, Budinsky R, Zacharewski TR. 2010. Automated dose-response analysis and comparative toxicogenomic evaluation of the hepatic effects elicited by TCDD, TCDF, and PCB126 in C57BL/6 mice. Toxicol Sci 118(1):286-297. doi:10.1093/toxsci/kfq236 PMID:20702594 PMCID:PMC2955213
• Kopec AK, Burgoon LD, Ibrahim-Aibo D, Mets BD, Tashiro C, Potter D, Sharratt B, Harkema JR, Zacharewski TR. 2010. PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands. Toxicol Appl Pharmacol 243(3):359-371. doi:10.1016/j.taap.2009.12.003 PMID:20005886 PMCID:PMC3987113
• Lu H, Crawford RB, Suarez-Martinez J, Kaplan BL, Kaminski NE. 2010. Induction of the aryl hydrocarbon receptor-responsive genes and modulation of the immunoglobulin M response by 2,3,7,8-tetrachlorodibenzo-p-dioxin in primary human B cells. Toxicol Sci 118(1):86-97. doi:10.1093/toxsci/kfq234 PMID:20702590 PMCID:PMC2955211
• Lu H, Kaplan BL, Crawford RB, Kaminski NE. 2010. Characterization of 2,3,7,8-tetrachlorodibenzo-pdioxin Effect on the CD40L-Induced IgM Antibody Responses in Primary Mouse and Human B Lymphocytes. The Toxicologist 99 (Abst. 1533).
• Ni Chadhain SM, Zylstra GJ. 2010. Functional Gene Diversity, Biogeography, and Dynamics. In: Handbook of Hydrocarbon and Lipid Microbiology. Springer Verlag GmbH, Heidelberg, Germany. pp.2413-2422.
• North CM, Crawford RB, Lu H, Kaminski NE. 2010. Multiparametric single cell analysis of toll-like receptor activated kinase phosphorylation alteration by 2,3,7,8-Tetrachlorodibenzo-p-dioxin. The Toxicologist 99 (Abst. 632).
• Parnell JJ, Denef VJ, Park J, Tsoi TV, Tiedje JM. 2010. Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400. Biodegradation 21(1):147-156. doi:10.1007/s10532-009-9289-4 PMID:19672561
• Phadnis AS, Manzan MA, Thomas RA, Kaminski NE. 2010. Direct regulation of Bach2 by 2,3,7,8- Tetrachlorodibenzo-p-dioxin in B lymphoma CH12.LX. The Toxicologist 99 (Abst. 73).
• Saini Y, Greenwood K, Merrill C, Kim KY, Patial S, Parameswaran N, Harkema JR, LaPres JJ. 2010. Acute cobalt-induced lung injury and the role of hypoxia-inducible factor 1 alpha in modulating inflammation. Toxicol Sci 116:673-681. doi:10.1093/toxsci/kfq155 PMID:20511350 PMCID:PMC2905409
• Saini Y, Lewandowski R, Bramble L, Harkema JR, LaPres JJ, Kim KY. 2010. Role of hypoxia-inducible factor 1{alpha} in modulating cobalt-induced lung inflammation. Am J Physiol 298(2):L139-L147. doi:10.1152/ajplung.00252.2009 PMID:19915160 PMCID:PMC2822559
• Shao H, Pinnavaia TJ. 2010. Synthesis and properties of nanoparticle forms saponite clay, cancrinite zeolite and phase mixtures thereof. Microporous Mesoporous Mater 133:10-17. doi:10.1016/j.micromeso.2010.04.002 PMID:21709774 PMCID:PMC3121892
• Thiex NW, Chames MC, Loch-Caruso R. 2010. Tissue-specific induction of COX-2 and prostaglandins in lipopolysaccharide-stimulated extraplacental human gestational membranes in a 2-chamber transwell culture system. Reprod Sci 17(12):1120-1129. doi:10.1177/1933719110378344 PMID:20861394 PMCID:PMC3096444
• Trosko JE, Upham BL. 2010. A paradigm shift is required for the risk assessment of potential human health after exposure to low level chemical exposures - a response to the toxicity testing in the 21st century report. Int J Toxicol 29(4):344-357. doi:10.1177/1091581810371384 PMID:20634539
• Xue S, Pinnavaia TJ. 2010. Methylene-functionalized saponite: a new type of organoclay with CH(2) groups substituting for bridging oxygen centers in the tetrahedral sheet. Appl Clay Sci 48(1-2):60-66. doi:10.1016/j.clay.2009.11.006 PMID:20508733 PMCID:PMC2874865
• Zhang Q, Bhattacharya S, Andersen ME, Conolly RB. 2010. Computational systems biology and dose-response modeling in relation to new directions in toxicity testing. J Environ Sci Health B 13(2-4):253-76. doi:10.1080/10937404.2010.483943 PMID:20574901
• Zhang Q, Bhattacharya S, Kline DE, Crawford RB, Thomas RS, Kaminski NE, Andersen ME, Conolly RB. 2010. Stochastic modeling of B lymphocyte terminal differentiation and its suppression by dioxin. BMC Syst Biol 4:40. doi:10.1186/1752-0509-4-40 PMID:20359356 PMCID:PMC2859749
• Zhang Q, Bhattacharya S, Woods CG, Andersen ME. 2010. Ultrasensitive Response Motifs in Biochemical Networks. Chapter 9 in: Quantitative Modeling in Toxicology. John Wiley & Sons, Hoboken, NJ. pp.199-218.
• Zhang Q, Pi J, Woods CG, Andersen ME. 2010. A systems biology perspective on Nrf2-mediated antioxidant response. Toxicol Appl Pharmacol 244(1):84-97. doi:10.1016/j.taap.2009.08.018 PMID:19716833 PMCID:PMC2837757

2009

• Crawford RB, North CM, Kaplan BL, Kaminski NE, Lu H. 2009. Establishment of an immunoglobulin m antibody-forming cell response model for characterizing immunotoxicity in primary human B cells. Toxicol Sci 112(2):363-373. doi:10.1093/toxsci/kfp224 PMID:19767444 PMCID:PMC2777081
• Liu C, Li H, Teppen BJ, Jonhston CT, Boyd SA. 2009. Mechanisms associated with the high adsorption of dibenzo-p-dioxin from water by smectite clays. Environ Sci Technol 43(8):2777-83. doi:10.1021/es802381z PMID:19475949
• North CM, Crawford RB, Kaminski NE, Lu H. 2009. Simultaneous in vivo time course and dose response evaluation for TCDD-induced impairment of the LPS-stimulated primary IgM response. Toxicol Sci 112(1):123-132. doi:10.1093/toxsci/kfp187 PMID:19675145 PMCID:PMC2769062
• North CM, Kim B, Snyder N, Crawford RB, Holsapple MP, Kaminski NE. 2009. TCDD-mediated suppression of the in vitro anti-sheep erythrocyte IgM antibody forming cell response is reversed by interferon-gamma. Toxicol Sci 107(1):85-92. doi:10.1093/toxsci/kfn223 PMID:18948302 PMCID:PMC2638643
• Park I, Pinnavaia TJ. 2009. Large-pore mesoporous silica with three-dimensional wormhole framework structures. Microporous Mesoporous Mater 118(1-3):239. doi:10.1016/j.micromeso.2008.08.027 PMID:20126285 PMCID:PMC2663960
• Prouzet E, Boissière C, Kim SS, Pinnavaia TJ. 2009. Roughness of mesoporous silica surfaces deduced from adsorption measurements. Microporous Mesoporous Mater 119:9-17. doi:10.1016/j.micromeso.2008.09.031
• Rana K, Boyd SA, Teppen BJ, Li H, Liu C, Johnston CT. 2009. Probing the microscopic hydrophobicity of smectite surfaces A vibrational spectroscopic study of dibenzo-p-dioxin sorption to smectite. Phys Chem Chem Phys 11(16):2976-2985. doi:10.1039/b822635k PMID:19421512
• Schneider D, Yoo B, Kaminski NE. 2009. Involvement of Blimp-1 and AP-1 dysregulation in the 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated suppression of the IgM response by B cells. Toxicol Sci 108(2):377-388. doi:10.1093/toxsci/kfp028 PMID:19237549 PMCID:PMC2664693
• Schuler L, Jouanneau Y, Ni Chadhain SM, Meyer C, Pouli M, Zylstra GJ, Hols P, Agathos SN. 2009. Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp strain LH128 able to oxidize benz[a]anthracene. Appl Microbiol Biotechnol 83(3):465-475. doi:10.1007/s00253-009-1858-2 PMID:19172265
• Sul WJ, Park J, Quensen JF, Rodrigues JM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. 2009. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Appl Environ Microbiol 75(17):5501-5506. doi:10.1128/AEM.00121-09 PMID:19648381 PMCID:PMC2737913
• Wang B, Bobe G, Bourquin LD, LaPres JJ. 2009. High sucrose diets promote intestinal epithelial cell proliferation and tumorigenesis in APC(Min) mice by increasing insulin and IGF-I levels. Nutr Cancer 61(1):81-93. doi:10.1080/01635580802372609 PMID:19116878
• Wang B, Bobe G, LaPres JJ, Bourquin LD. 2009. Dietary carbohydrate source alters gene expression profile of intestinal epithelium in mice. Nutr Cancer 61(1):146-155. doi:10.1080/01635580802372617 PMID:19116885
• Wu M, Yang X, Chan C. 2009. A dynamic analysis of IRS-PKR signaling in liver cells: a discrete modeling approach. PLoS One 4(12):e8040. doi:10.1371/journal.pone.0008040 PMID:19956598 PMCID:PMC2779448
• Zhang Q, Pi J, Woods CG, Andersen ME. 2009. Phase I to II cross-induction of xenobiotic metabolizing enzymes: a feedforward control mechanism for potential hormetic responses. Toxicol Appl Pharmacol 237(3):345-356. doi:10.1016/j.taap.2009.04.005 PMID:19371757 PMCID:PMC2696203

2008

• Boverhof DR, Burgoon LD, Williams KJ, Zacharewski TR. 2008. Inhibition of estrogen-mediated uterine gene expression responses by dioxin. Mol Pharmacol 73(1):82-93. doi:10.1124/mol.107.040451 PMID:17942748
• Cardenas E, Tiedje JM. 2008. New tools for discovering and characterizing microbial diversity. Curr Opin Biotechnol 19(6):544-549. doi:10.1016/j.copbio.2008.10.010 PMID:18984052
• Cheng G, Li H, Teppen BJ, Boyd SA. 2008. Octachlorodibenzodioxin formation on Fe(III)-montmorillonite clay. Environ Sci Technol 42(13):4758-4763. doi:10.1021/es7029834 PMID:18678002
• Kopec AK, Boverhof DR, Burgoon LD, Ibrahim-Aibo D, Harkema JR, Tashiro C, Chittim B, Zacharewski TR. 2008. Comparative toxicogenomic examination of the hepatic effects of PCB126 and TCDD in immature, ovariectomized C57BL/6 mice. Toxicol Sci 102(1):61-75. doi:10.1093/toxsci/kfm289 PMID:18042819
• Lee K, Lynd JD, O'Reilly S, Kiupel M, McCormick JJ, LaPres JJ. 2008. The biphasic role of the hypoxia-inducible factor prolyl-4-hydroxylase, PHD2, in modulating tumor-forming potential. Mol Cancer Res 6(5):829-842. doi:10.1158/1541-7786.MCR-07-2113 PMID:18505927
• Saini Y, Harkema JR, LaPres JJ. 2008. HIF1alpha is essential for normal intrauterine differentiation of alveolar epithelium and surfactant production in the newborn lung of mice. J Biol Chem 283(48):33650-33657. doi:10.1074/jbc.M805927200 PMID:18801745 PMCID:PMC2586263
• Schneider D, Manzan MA, Crawford RB, Chen W, Kaminski NE. 2008. 2,3,7,8-Tetrachlorodibenzo-p-dioxin-mediated impairment of B cell differentiation involves dysregulation of paired box 5 (Pax5) isoform, Pax5a. J Pharmacol Exp Ther 326(2):463-474. doi:10.1124/jpet.108.139857 PMID:18483191 PMCID:PMC2562000
• Schuler L, Ni Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN. 2008. Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp strain LB126. Appl Environ Microbiol 74(4):1050-1057. doi:10.1128/AEM.01627-07 PMID:18156320 PMCID:PMC2258591
• Tsuneta T, Loch-Caruso R, Quensen JF, Boyd SA, Hanna M, Grindatti C. 2008. Stimulatory effects of a microbially dechlorinated polychlorinated biphenyl (PCB) mixture on rat uterine contraction in vitro. Environ Res 107(2):185-193. doi:10.1016/j.envres.2008.01.011 PMID:18359014 PMCID:PMC2699757

2007

• Bezdecny SA, Karmaus P, Roth RA, Ganey PE. 2007. 2,2',4,4'-Tetrachlorobiphenyl upregulates cyclooxygenase-2 in HL-60 cells via p38 mitogen-activated protein kinase and NF-kappaB. Toxicol Appl Pharmacol 221(3):285-294. doi:10.1016/j.taap.2007.03.019 PMID:17482227 PMCID:PMC1950673
• Jeong HY, Hayes KF. 2007. Reductive dechlorination of tetrachloroethylene and trichloroethylene by mackinawite (FeS) in the presence of metals: reaction rates. Environ Sci Technol 41(18):6390-6396. PMID:17948784
• Jeong HY, Kim H, Hayes KF. 2007. Reductive dechlorination pathways of tetrachloroethylene and trichloroethylene and subsequent transformation of their dechlorination products by mackinawite (FeS) in the presence of metals. Environ Sci Technol 41(22):7736-7743. doi:10.1021/es0708518 PMID:18075082
• Jeong HY, Klaue B, Blum JD, Hayes KF. 2007. Sorption of mercuric ion by synthetic nanocrystalline mackinawite (FeS). Environ Sci Technol 41(22):7699-7705. PMID:18075077
• Lee K, Roth RA, LaPres JJ. 2007. Hypoxia, therapeutics, and toxicity. J Pharmacol Exp Ther 113(2):229-46. PMID:17046066
• Leigh MB, Pellizari VH, Uhlik O, Sutka R, Rodrigues JM, Ostrom N, Zhou J, Tiedje JM. 2007. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 1(2):134-148. doi:10.1038/ismej.2007.26 PMID:18043623
• Ras R, Johnston CT, Schoonheydt RA. 2007. Relation between s-polarized and p-polarized internal reflection spectra: application for the spectral resolution of perpendicular vibrational modes. J Phys Chem A 111(36):8787-8791. PMID:17665884
• Ras R, Umemura Y, Johnston CT, Yamagishi A, Schoonheydt RA. 2007. Ultrathin hybrid films of clay minerals. Phys Chem Chem Phys 9(8):918. PMID:17301882
• Satoh AY, Trosko JE, Masten S. 2007. Methylene blue dye test for rapid qualitative detection of hydroxyl radicals formed in a Fenton's reaction aqueous solution. Environ Sci Technol 41(8):2881-7. PMID:17533853
• Shnaider D, Byung SY, Kaminski NE. 2007. A putative role for Blimp-1 and AP-1 in TCDD-induced suppression of the IgM response in B cells. Environ Health Perspect 96(1):(Abst.828).
• Szabo T, Szekeres M, Dekany I, Jackers C, De Feyter S, Johnston CT, Schoonheydt RA. 2007. Layer-by-layer construction of ultrathin hybrid films with proteins and clay minerals. Journal of Physical Chemistry C 111(34):12730-12740.
• Tai M, Upham BL, Olson LK, Tsao M, Reed DN, Trosko JE. 2007. Cigarette smoke components inhibited intercellular communication and differentiation in human pancreatic ductal epithelial cells. Int J Cancer 120(9):1855-62. PMID:17266035
• Upham BL, Guzvic M, Scott J, Carbone JM, Blaha L, Coe C, Li L, Rummel AM, Trosko JE. 2007. Inhibition of gap junctional intercellular communication and activation of mitogen-activated protein kinase by tumor-promoting organic peroxides and protection by resveratrol. Nutr Cancer 57(1):38-47. PMID:17516861
• Yang L, Allen BC, Thomas RS. 2007. BMDExpress: a software tool for the benchmark dose analyses of genomic data. BMC Genomics 8:387. PMID:17961223

2006

• Brant KA, Loch-Caruso R. 2006. PCB 50 stimulates release of arachidonic acid and prostaglandins from late gestation rat amnion fibroblast cells. Reprod Toxicol 22(4):591-8. PMID:16713698
• Burgoon LD, Boutros PC, Dere E, Zacharewski TR. 2006. dbZach: A MIAME-compliant toxicogenomic supportive relational database. Toxicol Sci 90(2):558-68. PMID:16403854
• Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, Land M, Lao V, Larimer FW, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson PM, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 973-Mbp genome shaped for versatility. Proc Natl Acad Sci U S A 103(42):15280-15287. doi:10.1073/pnas.0606924103 PMID:17030797 PMCID:PMC1622818
• Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JM, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD. 2006. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Appl Environ Microbiol 72(1):585-595. doi:10.1128/AEM.72.1.585-595.2006 PMID:16391095 PMCID:PMC1352278
• Learn CA, Kaminski NE, Thomas RS. 2006. Modulation of the B-Cell immunologic program by superfund halogenated aromatic hydrocarbons. In: Superfund Basic Research Program Annual Meeting, December 11-12. La Jolla, CA.
• Lee K, Burgoon LD, Lamb L, Dere E, Zacharewski TR, Hogenesch JB, LaPres JJ. 2006. Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades. Chem Res Toxicol 19(10):1284-1293. doi:10.1021/tx060068d PMID:17040097 PMCID:PMC3152583
• Ni Chadhain SM, Norman RS, Pesce KV, Kukor JJ, Zylstra GJ. 2006. Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Appl Environ Microbiol 72(6):4078-4087. doi:10.1128/AEM.02969-05 PMID:16751518 PMCID:PMC1489606
• Parnell JJ, Park J, Denef VJ, Tsoi TV, Hashsham SA, Quensen JF, Tiedje JM. 2006. Coping with polychlorinated biphenyl (PCB) toxicity: physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Appl Environ Microbiol 72(10):6607-14. PMID:17021212
• Shnaider D, Yoo BS, Kaminski NE. 2006. Blimp-1 and Pax5 are involved in the suppression of B-Cell differentiation by TCDD. In: Superfund Basic Research Program Annual Meeting, December 11-12. La Jolla, CA.
• Zhang Q, Thomas RS, Kaminski NE, Conolly RB, Andersen ME. 2006. Computational modeling of TCDD disruption of B-cell terminal differentiation. In: Superfund Basic Research Program Annual Meeting, December 11-12. La Jolla, CA.

2005

• Burgoon LD, Eckel-Passow JE, Gennings C, Boverhof DR, Burt JW, Fong C, Zacharewski TR. 2005. Protocols for the assurance of microarray data quality and process control. Nucleic Acids Res 33(19):e172. PMID:16272462
• Danielsen KM, Gland JL, Hayes KF. 2005. Influence of amine buffers on carbon tetrachloride reductive dechlorination by the iron oxide magnetite. Environ Sci Technol 39(3):756-763. PMID:15757336
• Loch-Caruso R, Upham BL, Harris C, Trosko JE. 2005. Divergent roles for glutathione in lindane-induced acute and delayed-onset inhibition of rat myometrial gap junctions. Toxicol Sci 85(1):694-702. PMID:15716478
• Luster-Teasley SL, Ganey PE, DiOrio M, Ward JS, Maleczka RE, Trosko JE, Masten S. 2005. Effect of byproducts from the ozonation of pyrene: Biphenyl-2,2 ',6,6 '-tetracarbaldehyde and biphenyl-2,2 ',6,6 '-tetracarboxylic acid on gap junction intercellular communication and neutrophil function. Environ Toxicol Chem 24(3):733-740. PMID:15786580
• McKimmy E, Dulebohn J, Shah J, Pinnavaia TJ. 2005. Trapping of arsenite by mercaptopropyl-functionalized mesostructured silica with a wormhole framework. Chem Commun (Camb) 29:3697-3699. PMID:16027915
• Shah J, Pinnavaia TJ. 2005. Thiol-functionalized mesostructured silica vesicles. Chem Commun (Camb) 12:1598-1600. PMID:15770272
• Shah J, Pinnavaia TJ. 2005. Thiol-functionalized silica with mesocellular foam and hybrid mesocellular foam-wormhole structures. Chem Commun (Camb) 17(5):947-949.
• Trosko JE, Upham BL. 2005. The emperor wears no clothes in the field of carcinogen risk assessment: ignored concepts in cancer risk assessment. Mutagenesis 20(2):81-92. PMID:15784692

2004

• Abriola LM, Bradford SA, Lang J, Gaither CL. 2004. Volatilization of binary nonaqueous phase liquid mixtures in unsaturated porous media. Vadose Zone Journal 3:645-655.
• Boverhof DR, Tam E, Harney AS, Crawford RB, Kaminski NE, Zacharewski TR. 2004. 2,3,7,8-Tetrachlorodibenzo-p-dioxin induces suppressor of cytokine signaling 2 in murine B cells. Mol Pharmacol 66(6):1662-1670. PMID:15371557
• Boverhof DR, Tam E, Harney AS, Crawford RB, Kaminski NE, Zacharewski TR. 2004. Suppressor of cytokine signaling-2: a novel TCDD inducible gene in CH12.LX murine B-cells. Environ Health Perspect 78(1-S):(Abst.1412).
• Brant KA, Loch-Caruso R. 2004. Gestational increases and activation of rat uterine phospholipase A2 enzyme expression mediates PCB 50 - induced stimulation of uterine function. In: Proceedings of the 43^rd Annual Meeting of the Society of Toxicology (SOT), March 21-25, 2004. Baltimore, MD.
• Chen C, McKimmy E, Pinnavaia TJ, Hayes KF. 2004. XAS study of mercury(II) ions trapped in mercaptan - Functionalized mesostructured silicate with a wormhole framework structure. Environ Sci Technol 38(18):4758-4762. PMID:15487784
• Chung D, Loch-Caruso R. 2004. Role of gap junctions in the modification on rat uterine contraction by 2,2'-dichlorobiphenyl. In: Proceedings of the 43^rd Annual Meeting of the Society of Toxicology (SOT), March 21-25, 2004. Baltimore, MD.
• Danielsen KM, Hayes KF. 2004. pH dependence of carbon tetrachloride reductive dechlorination by magnetite. Environ Sci Technol 38(18):4745-4752. PMID:15487782
• Davila JC, Cezar GG, Thiede M, Strom S, Miki T, Trosko JE. 2004. Use and application of stem cells in toxicology. Toxicol Sci 79(2):214-223. PMID:15014205
• Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM. 2004. Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol 70(8):4961-4970. PMID:15294836
• Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen JF, Tiedje JM, Vandamme P. 2004. Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov. Int J Syst Evol Microbiol 54(5):1677-1681.
• Huang QG, Weber WJ. 2004. Interactions of soil-derived dissolved organic matter with phenol in peroxidase-catalyzed oxidative coupling reactions. Environ Sci Technol 38(1):338-344. PMID:14740756
• Huang QG, Weber WJ. 2004. Peroxidase-catalyzed coupling of phenol in the presence of model inorganic and organic solid phases. Environ Sci Technol 38(19):5238-5245. PMID:15506223
• Linning KD, Tai M, Madhukar BV, Chang C, Reed DN, Ferber S, Trosko JE, Olson LK. 2004. Redox-mediated enrichment of self-renewing adult human pancreatic cells that possess endocrine differentiation potential. Pancreas 29(3):E64-E76. PMID:15367896
• Loch-Caruso R, Galvez MM, Brant KA, Chung D. 2004. Cell and toxicant specific phosphorylation of conexin43: effects of lindane and TPA on rat myometrial and WB-F344 liver cell gap junctions. Cell Biol Toxicol 20(3):147-169. doi:10.1023/B:CBTO.0000029465.74815.62 PMID:15250540
• Loch-Caruso R, Tsuneta T, Hanna M, Grindatti C, Quensen JF. 2004. Stimulatory effects of a microbially dechlorinated polychlorinated biphenyl (PCB) mixture on rat uterine contraction in vitro. In: Proceedings of the 43^rd Annual Meeting of the Society of Toxicology (SOT), March 21-25, 2004. Baltimore, MD.
• Madhukar BV, Chen G, Wood BF. 2004. PCB activation of extracellular signal-regulated kinases (ERKs) is mediated through epidermal growth factor receptor and intracellular calcium. Environ Health Perspect 78(S-1):Abst.1170.
• McKarns SC, Schwartz RH, Kaminski NE. 2004. Smad3 is essential for TGF-beta 1 to suppress IL-2 production and TCR-induced proliferation, but not IL-2-induced proliferation. J Immunol 172(7):4275-4284. PMID:15034041
• Moggs JG, Goodman JI, Trosko JE, Roberts RA. 2004. Epigenetics and cancer: implications for drug discovery and safety assessment. Toxicol Appl Pharmacol 196(3):422-430. PMID:15094313
• Nakamura Y, Trosko JE, Chang C, Upham BL. 2004. Psyllium extracts decreased neoplastic phenotypes induced by the Ha-Ras oncogene transfected into a rat liver oval cell line. Cancer Lett 203(1):13-24. PMID:14670613
• Ogawa T, Hayashi T, Kyoizumi S, Kusunoki Y, Nakachi K, MacPhee DG, Trosko JE, Kataoka K, Yorioka N. 2004. Anisomycin downregulates gap-junctional intercellular communication via the p38 MAP-kinase pathway. Journal of Cell Science 117(10):2087-2096. PMID:15054109
• Park J, Noh D, Kim S, Kim S, Kong G, Chang C, Lee Y, Trosko JE, Kang K. 2004. Gene expression analysis in SV40-immortalized human breast luminal epithelial cells with stem cell characteristics using a cDNA microarray. Int J Oncol 24(6):1545-1558. PMID:15138599
• Shah J, Kim SS, Pinnavaia TJ. 2004. A versatile pathway for the direct assembly of organo-functional mesostructures from sodium silicate. Chem Commun (Camb) 5:572-573. PMID:14973613
• Smithwick LA, Quensen JF, Smith A, Kurtz DT, London L, Morris PJ. 2004. The inhibition of LPS-induced splenocyte proliferation by ortho-substituted and microbially dechlorinated polychlorinated biphenyls is associated with a decreased expression of cyclin D2. Toxicology 204(1):61-74. PMID:15369849
• Tiedje JM, Konstantinidis KT. 2004. Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A 101(9):3160-3165. PMID:14973198
• Trosko JE, Chang C, Upham BL, Tai M. 2004. Ignored hallmarks of carcinogenesis: stem cells and cell-cell communication. Ann N Y Acad Sci 1028:192-201. doi:10.1196/annals.1322.023 PMID:15650245
• Ward MJ, Fu QS, Rhoads KR, Yeung CH, Spormann AM, Criddle CS. 2004. A derivative of the menaquinone precursor 1,4-dihydroxy-2-naphthoate is involved in the reductive transformation of carbon tetrachloride by aerobically grown Shewanella oneidensis MR-1. Appl Microbiol Biotechnol 63(5):571-577. PMID:12908086

2003

• Adriaens P, Barcelona MJ, Hayes KF, McCormick ML, Skubal KL. 2003. Biotic and abiotic dechlorination in iron-reducing and sulfidogenic environments. In: Proceedings of the International In Situ and On-Site Bioremediation Symposium, 6th, June 4-7. San Diego, CA. pp.193-199.
• Bezdecny SA, Roth RA, Ganey PE. 2003. Expression of cyclooxygenase-2 in HL-60 cells exposed to polychlorinated biphenyls. Toxicol Sci 72(1):1571Suppl.S..
• Blankenship AL, Hilscherova K, Nie M, Coady KK, Villalobos SA, Kannan K, Powell DC, Bursian SJ, Giesy JP. 2003. Mechanisms of TCDD-induced abnormalities and embryo lethality in white leghorn chickens. Comp Biochem Physiol C Toxicol Pharmacol 136(1):47-62. PMID:14522598
• Bost FD, Kukor JJ. 2003. Characterization of a novel Acinetobacter species containing a toluene dioxygenase. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC. pp.581.
• Brant KA, Loch-Caruso R. 2003. iPLA2 contributes to the gestation day sensitivity to 2,2',4,6 tetrachlorobiphenyl-induced stimulation of contraction frequency in rat uterus. Biol Reprod 68:382Suppl.1.
• Burgoon LD, Boverhof DR, Eckel-Passow JE, Gennings C, Zacharewski TR. 2003. Comparison of the modeified loop and independent reference microarray designs. In: Proceedings of the 2nd Annual Great Lakes Bioinformatic Retreat - Michigan Center for Biological Information. Kellogg Center, Aug. 19-20. Michigan State University, East Lansing, MI.
• Burgoon LD, Boverhof DR, Eckel-Passow JE, Gennings C, Zacharewski TR. 2003. Comparison of the modified loop and independent reference microarray designs. In: Proceedings of the 6th International Meeting of the Microarray Gene Expression Data Society. Sept. 3-5. Aix-en-Provence, France.
• Chung D, Loch-Caruso R. 2003. Role of oxidative stress in the modification on rat uterine contraction by 2,2 '-dichlorobiphenyl. Toxicol Sci 72(1):376.
• Danielsen KM, Hayes KF. 2003. Base enhanced dechlorination of carbon tetrachloride by Magnetite. In: Proceedings of the 225^th ACS (American Chemical Society) National Meeting - Spring 2003. New Orleans, LA.
• Denef VJ, Park J, Rodrigues JM, Tsoi TV, Hashsham SA, Tiedje JM. 2003. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ Microbiol 5(10):933-943. PMID:14510847
• Fleming MA, Kukor JJ, Haggblom M. 2003. Plant-mediated effects on polycyclic aromatic hydrocarbon (PAH) degradation by bacteria in the rhizosphere of the salt marsh grasses, Spartina alterniflora and Phragmites australis. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC. pp.519.
• Fu QS, Jung PT, Koster van Groos PG, Hayes KF, Adriaens P, Petrovskis E, Skubal KL, Hobbs SK, Shi G, Bednarski MD, Criddle CS. 2003. SELDI-MS characterization of extracellular proteins involved in carbon tetrachloride trasformation by Pseudomonas stutzeri. In: Proceedings of the American Society for Microbiology, 103rd General Meeting, May 18-22. Washington, DC.
• Giesy JP, Snyder EM, Nichols KM, Snyder SA, Villalobos SA, Jones PD, Fitzgerald SD. 2003. Examination of reproductive endpoints in goldfish (Carassius auratus) exposed in situ to municipal sewage treatment plant effluent discharges in Michigan, USA. Environ Toxicol Chem 22(10):2416-2431. PMID:14552007
• Hilscherova K, Blankenship AL, Kannan K, Nie M, Williams LL, Coady KK, Upham BL, Trosko JE, Bursian SJ, Giesy JP. 2003. Oxidative stress in laboratory-incubated double-crested cormorant eggs collected from the Great Lakes. Arch Environ Contam Toxicol 45(4):533-546. PMID:14708670
• Hilscherova K, Blankenship AL, Nie M, Coady KK, Upham BL, Trosko JE, Giesy JP. 2003. Oxidative stress in liver and brain of the hatchling chicken (Gallus domesticus) following in ovo injection with TCDD. Comp Biochem Physiol C Toxicol Pharmacol 136(1):29-45. PMID:14522597
• Holland MS, Griffin LD, Trosko JE, Holland RE. 2003. Ontogeny of bovine mammary gland progenitor cells. In: Proceedings of the Tuskegee University Medical Symposium, March 3-6.
• Huang QG, Weber WJ. 2003. Reactive Inclusion of phenanthrene in the Oxidative Coupling Reactions of Phenol: Implications for Irreversible Sequestration via Humification. In: Proceedings of the 226^th ACS (American Chemical Society) National Meeting - Fall 2003. New York, NY.
• Kim SS, Shah J, Pinnavaia TJ. 2003. Colloid-imprinted carbons as templates for the nanocasting synthesis of mesoporous ZSM-5 zeolite. Chemistry of Materials 15(8):1664-1668.
• Kim SS, Shah J, Pinnavaia TJ. 2003. Nanocasting of carbon nanotubes: in-situ graphitization of a low-cost mesostructured silica templated by non-ionic surfactant micelles. Chem Commun (Camb) (12):1436-1437. PMID:12841279
• Lee DH, Kahng H, Malinverni J, Kukor JJ, Oh D. 2003. Cloning of a catalase gene cluster from the photosynthetic bacterium Rhodospirillum rubrum S1 and characterization of the catalase overexpressed in E. coli. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC. pp.335.
• Luster-Teasley SL, Yao JJ, Herner HH, Trosko JE, Masten S. 2003. Ozonation of chrysene: evaluation of by-product mixtures and identification of toxic constituents. Environ Sci Technol 36(5):869-876. PMID:11918009
• Machala M, Blaha L, Kapplova P, Pencikova K, Neca J, Andrysik Z, Upham BL, Vondracek J. 2003. Acute Exposure to Polycyclic Aromatic Hydrocarbons Affects Multiple Cell Signaling Components in Rat Liver Epthelial Cell Line. In: Proceedings of the Annual Meeting of EuroTox, September 28. Florence, Italy.
• Machala M, Blaha L, Kapplova P, Pencikova K, Neca J, Andrysik Z, Upham BL, Vondracek J. 2003. Inhibition of GJIC by Polycyclic Aromatic Hydrocarbons and Polychlorinated Biphenyls: Relative Inhibitory Potencies and Screening for Potential Mode(s) of Action. In: Proceedings of the International Gap Junction Congress, August 23. Cambridge, England.
• Machala M, Blaha L, Vondracek J, Trosko JE, Scott J, Upham BL. 2003. Inhibition of gap junctional intercellular communication by noncoplanar polychlorinated biphenyls: Inhibitory potencies and screening for potential mode(s) of action. Toxicol Sci 76(1):102-111. PMID:12915713
• Madhukar BV, Hernandez-Maldonado O. 2003. A diorthochlorinated PCB congener 2,2 ',4,4 '-tetrachlorobiphenyl (TCB) activates extracellular signal regulated kinases (ERKs) independent of protein kinase C (PKC) in JB6 mouse epidermal cells. Toxicol Sci 72(1):1574Suppl.S.
• Malinverni J, Kukor JJ. 2003. Two homologous transcriptional activators with distinct effector affinity profiles allow for utilization of a broad range of substrates by a toluene-3-monooxygenase pathway. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC. pp.526.
• McCormick ML, Adriaens P, Hayes KF. 2003. Transformation of chlorinated solvents by biologically activated minerals. In: Proceedings of the In Situ and On-Site Bioremediation, 7th International Symposium, June 2-5. Orlando, FL.
• McCormick ML, Jung PT, Koster van Groos PG, Hayes KF, Adriaens P, Petrovskis E, Skubal KL. 2003. Assessing biotic and abiotic contributions to chlorinated solvent transformation in iron reducing and sulfidogenic environments. In: Groundwater Quality: Natural and Enhanced Restoration of Groundwater Pollution. Proceedings of the Groundwater Quality 2001 June Conference. IAHS (International Association of Hydrological Sciences) Publishing, Sheffield, United Kingdom. pp.119-125.
• McKarns SC, Letterio JJ, Kaminski NE. 2003. Concentration-dependent bifunctional effect of TGF-beta(1) on immunoglobulin production: a role for Smad3 in IgA production in vitro. Int Immunopharmacol 3(13-14):1761-1774. PMID:14636827
• McKimmy E, Pinnavaia TJ. 2003. Ultra-functionalized organosilica mesostructures as mercury(II) trapping agents. In: Abstracts Of Papers Of The American Chemical Society. pp.016-ENVRPart1.
• McKimmy E, Pinnavaia TJ. 2003. Ultra-functionalized organosilica mesostructures as mercury(II) trapping agents. Chem Commun (Camb) 226:016-ENVRPart1.
• Nam K, Kukor JJ. 2003. Bioavailability of organohalides. In: Dehalogenation: Microbial Processes and Environmental Applications. Kluwer Academic Press, pp.291-302.
• Nasser F, Chung D, Loch-Caruso R. 2003. Roles of endocannabinoids in rat uterine contractions. Biol Reprod 68:390Suppl.1.
• Ozsoz M, Erdem A, Ozkan D, Kerman K, Pinnavaia TJ. 2003. Clay/sol-gel-modified electrodes for the selective electrochemical monitoring of 2,4-dichlorophenol. Langmuir 19(11):4728-4732.
• Park J. 2003. Expanded applicability of DNA microarray technology in environmental microbiology. In: Proceedings of the International Meeting of the Federation of Korean Microbiological Societies. October 24-25. College of Science, Yonsei University, Seoul, Korea, Republic Of.
• Park J, Li H, Tiedje JM. 2003. Determination of gene-dependent sorption of DNA on clays using a microarray technique. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC.
• Park J, Malinverni J, Adriaens P, Kukor JJ. 2003. Quantitative structure–activity relationship (QSAR) analysis of aromatic effector specificity in NtrC-like transcriptional activators from aromatic oxidizing bacteria. FEMS Microbiol Lett 224(1):45-52. PMID:12855166
• Park J, Ramsburg A, Abriola LM, Tiedje JM. 2003. Biofilm-associated utilization of biphenyl on organo-coated sand by Burkholderia sp. LB400. In: Proceedings of the General Meeting, American Society for Microbiology, May 23-27. New Orleans, LA.
• Putthividhya A, Abriola LM, Kukor JJ. 2003. Effects of Substrate Exposure History on the EPS Production fo TCE Degrading Toluene Oxidizing Bacteria. In: Proceedings of the 103^rd General Meeting of the American Society for Microbiology, May 18-22. Washington, DC.
• Satoh AY, Trosko JE, Masten S. 2003. Epigenetic toxicity of hydroxylated biphenyls and hydroxylated polychlorinated biphenyls on normal rat liver epithelial cells. Environ Sci Technol 37(12):2727-2733. PMID:12854712
• Smithwick LA, Smith A, Quensen JF, Stack A, London L, Morris PJ. 2003. Inhibition of LPS-induced splenocyte proliferation by orthosubstituted polychlorinated biphenyl congeners. Toxicology 188(2-3):319-333. PMID:12767701
• Suh J, Kang J, Yang K, Kaminski NE. 2003. Antagonism of aryl hydrocarbon receptor-dependent induction of CYP1A1 and inhibition of IgM expression by di-ortho-substituted polychlorinated biphenyls. Toxicol Appl Pharmacol 187(1):11-21. PMID:12628580
• Sulentic CE, Na YJ, Fintushel S, Kaminski NE. 2003. Transcriptional regulation of the hs4 domain through a DRE and kappaB motif. Environ Health Perspect 72(1-S):1780.
• Tai M, Olson LK, Madhukar BV, Linning KD, Van Camp LL, Tsao M, Trosko JE. 2003. Characterization of gap junctional intercellular communication in immortalized human pancreatic ductal epithelial cells with stem cell characteristics. Pancreas 26(1):e18-e26. PMID:12499933
• Tai M, Reed DN, Chang C, Trosko JE. 2003. Role of pancreatic stem cells in the emergence of pancreatic stellate cells and fibroblast-like cells in chronic pancreatitis. In: Proceedings of Pediatrics and Human Development Research Day Symposium. Michigan State University, East Lansing, MI.
• Tang J, Weber WJ. 2003. Engineered Natural Organic Sorbents: Characterization of Their Properties and Sorption/desorption Behaviors. In: Proceedings of the 226^th ACS (American Chemical Society) National Meeting - Fall 2003. New York, NY.
• Tiedje JM. 2003. Molecular windows into microbial communities. In: Proceedings of the International Meeting of the Federation of Korean Microbiological Societies. October 24-25. College of Science, Yonsei University, Seoul, Korea, Republic Of.
• Tiedje JM. 2003. Molecular windows into microbial communities. In: Proceedings of the International Meeting of the Federation of Korean Microbiological Societies. October 24-25. College of Science, Yonsei University, Seoul, Korea, Republic Of.
• Trosko JE. 2003. Epigenetic toxicant-induced modulation of Cell-cell comunication/pesticides/risk assessment: Different mechanisms but all roads lead to Rome. In: Proceedings of the International Symposium of the American Chemical Society, March 24. New Orleans,, LA.
• Trosko JE. 2003. Human stem cells as targets for the aging and diseases of aging processes. Med Hypotheses 60(3):439-447. PMID:12581626
• Trosko JE. 2003. Isolating adult human stem cells and their use in treating various human diseases by their use in screening for potential Chemopreventive agents. In: Proceedings of the First Nagasaki Symposium of International Consortium for Medical Care of Hibasusha and Radiation Life Sciences. Feb. 21-22. Nagasaki, Japan.
• Trosko JE. 2003. Scientific concepts of human nature and their implications to bioethics in a scientific and technologically-altered world. Journal of International Society of Bioethics 68-83.
• Trosko JE. 2003. The role of stem cells and gap junctional intercellular communication in carcinogenesis. J Biochem Mol Toxicol 36(1):43-48. PMID:12542974
• Trosko JE, Chang C. 2003. Hallmarks of Radiation Carcinogenesis: Ignored Concepts. In: Radiation and Humankind. Elsevier Science, Amsterdam, Netherlands. pp.31-36.
• Trosko JE, Chang C. 2003. Isolation and characterization of normal adult human epithelial pluripotent stem cells. Oncol Res 13(6-10):353-357. PMID:12725525
• Trosko JE, Chang C, Tai M, Upham BL. 2003. The role of stem cells and cell-cell communication in cancer chemoprevention stategies. In: Proceedings of the ICMAA-VII (8th International Conference on mechanisms of anti-mutagenesis and anticarcinogenesis) Oct. 4-8. Pisa, Italy.
• Upham BL. 2003. Integrated Signaling Effects of Epigenetic Toxicants. In: Proceedings of the Epigenetic Toxicant Symposium at the 2003 Congress on in vitro Biology, May 31. Portland, OR.
• Upham BL, Koski TR, Rummel AM, Wilson MR, Horvath A, Trosko JE. 2003. Differential roles of 2, 6, and 8 carbon ceramides on the modulation of gap junctional communication and apoptosis during carcinogenesis. Cancer Lett 191(1):27-34. PMID:12609706
• Upham BL, Rummel AM, Carbone JM, Trosko JE, Ouyang Y, Crawford RB, Kaminski NE. 2003. Cannabinoids inhibit gap junctional intercellular communication and activate ERK in a rat liver epithelial cell line. Int J Cancer 104(1):12-18. doi:10.1002/ijc.10899 PMID:12532414
• Upham BL, Suzuki J, Chen G, Wang Y, McCabe LR, Chang C, Krutovskikh VA, Yamasaki H, Trosko JE. 2003. Reduced gap junctional intercellular communication and altered biological effects in mouse osteoblast and rat liver oval cell lines transfected with dominant-negative connexin 43. Mol Carcinog 37(4):192-201. PMID:12891628
• Weber WJ. 2003. Organic Contaminant Bioavailability in Groundwater and Subsurface Systems. In: Proceedings of the Water Purification and Reuse, Engineering Conferences International, June 9-13. Potsdam, Germany.
• Weber WJ, Huang QG. 2003. Inclusion of persistent organic pollutants in humification processes: Direct chemical incorporation of phenanthrene via oxidative coupling. Environ Sci Technol 37(18):4221-4227. PMID:14524456
• Zacharewski TR. 2003. Incorporation of a systems toxicology approach into mechanistic and predictive toxicology. In: Proceedings of the Biogen's First Annual Preclinical & Clinical Development Science (PCDS) Offsite Symposium. Cliff House, Oct. 23. Ogunquit, ME.
• Zacharewski TR. 2003. Incorporation of computational approaches into mechanistic and predictive toxicology. In: Proceedings of the Center for Biological Modeling - Biological Networks Symposium, Oct. 17. Michigan State University, East Lansing, MI.
• Zacharewski TR. 2003. Integrating toxicogenomics into predictive and mechanistic toxicology. In: Proceedings of the Lorne Genome Conference. Febuary 16-20. Lorne, Australia.

2002

• Blaha L, Kapplova P, Vondracek J, Upham BL, Machala M. 2002. Inhibition of gap-junctional intercellular communication by environmentally occurring polycyclic aromatic hydrocarbons. Toxicol Sci 65:43-51. PMID:11752684
• Cho Y, Kahng H, Kukor JJ, Kim C, Oh K. 2002. Physiological and cellular responses of the 2,4-D degrading bacterium, Burkholderia cepacia YK-2, to the phenoxyherbicides 2,4-D and 2,4,5-T. Curr Microbiol 45(6):415-422. doi:10.1007/s00284-002-3784-8 PMID:12402082
• Dybas MJ, Hyndman DW, Heine R, Tiedje JM, Linning KD, Wiggert D, Voice TC, Zhao X, Dybas L, Criddle CS. 2002. Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation. Environ Sci Technol 36(16):3635-3644. PMID:12214659
• Horvath A, Upham BL, Ganev V, Trosko JE. 2002. Determination of the epigenetic effects of ochratoxin in a human kidney and a rat liver epithelial cell line. Toxicon 40:273-282. PMID:11711124
• Hu W, Jones PD, Upham BL, Trosko JE, Lau C, Giesy JP. 2002. Inhibition of gap junctional intercellular communication by perfluorinated compounds in rat liver and dolphin kidney epithelial cell lines in vitro and Sprague-Dawley rats in vivo. Toxicol Sci 68(2):429-436. PMID:12151638
• Kahng H, Nam K, Kukor JJ, Yoon BJ, Lee DH, Oh D, Kam S, Oh K. 2002. PAH utilization by Pseudomonas rhodesiae KK1 isolated from a former manufactured-gas plant site. Appl Microbiol Biotechnol 60(4):475-480. doi:10.1007/s00253-002-1137-y PMID:12466890
• Kukor JJ, Malinverni J. 2002. Regulation of a bacterial aromatic monooxygenase pathway in response to solvent exposure. Journal of Microbiology 40(4):249-253.
• Loch-Caruso R. 2002. Uterine muscle as a potential target of polychlorinated biphenyls during pregnancy. Int J Hyg Environ Health 205:121-130. PMID:12018005
• Madhukar BV, Hernandez-Maldonado O. 2002. Di-ortho chlorine substituted PCB congeners activate mitogen-activated protein kinases independent of protein kianse C activation in JB-6 mouse epidermal cells. In: SOT 41^st Annual Meeting.
• McCormick ML, Bouwer EJ, Adriaens P. 2002. Carbon tetrachloride transformation in a defined iron-reducing culture: relative kinetics of biotic and abiotic reactions. Environ Sci Technol 36:403-410.
• Na YJ, Sulentic CE, Yang K, Holsapple MP, Kaminski NE. 2002. Non-coplanar polychlorinated biphenyl (PCB) congeners inhibit PCB 126-induced activation of the 3'alpha enhancer in lipopolysaccharide-stimulated CH12.LX B-cells. Environ Health Perspect 66(1-S):
• Nam K, Moon HS, Kim JY, Kukor JJ. 2002. Linkage between biodegradation of polycyclic aromatic hydrocarbons and phospholipid profiles in soil isolates. J Microbiol Biotechnol 12(1):77-83.
• Olivero J, Bezdecny SA, Ganey PE. 2002. A molecular motif required for the activation of rat neutrophil Phospholipase A₂ by organochlorine compounds. Chem Res Toxicol 15(2):153-159.
• Ozkan D, Kerman K, Meric B, Kara P, Demirkan H, Polverejan M, Pinnavaia TJ, Ozsoz M. 2002. Heterostructured fuorohectorite clay as an electrochemical sensor for the detection of 2,4-dichlorophenol and the herbicide 2,4-D. Chemistry of Materials 14(4):1755-1761.
• Park J, Kukor JJ, Abriola LM. 2002. Characterization of the adaptive response to trichloroethylene-mediated stresses in Ralstonia pickettii PKO1. Appl Environ Microbiol 68(11):5231-5240. PMID:12406709 PMCID:PMC129943
• Phanikumar MS, Hyndman DW, Criddle CS. 2002. Biocurtain design using reactive transport models. Ground Water Monit Remediat 22(3):113-123.
• Phanikumar MS, Hyndman DW, Wiggert D, Dybas MJ, Witt ME, Criddle CS. 2002. Simulation of microbial transport and carbon tetrachloride biodegradation in intermittently-fed aquifer columns. Water Resour Res 38(4):1033.
• Polverejan M, Liu Y, Pinnavaia TJ. 2002. Aluminated derivatives of porous clay heterostructure (PCH) assembled from synthetic saponite: properties as supermicroporous to small mesoporous acid catalysts. Chemistry of Materials 14:2283-2288.
• Sepulveda-Torres Ld, Huang A, Kim H, Criddle CS. 2002. Analysis of regulatory elements and genes required for carbon tetrachloride degradation in Pseudomonas stutzeri strain KC. J Mol Microbiol Biotechnol 4(2):151-161. PMID:11873910
• Suh J, Jeon YJ, Kim HM, Kang J, Kaminski NE, Yang K. 2002. Aryl hydrocarbon receptor-dependent inhibition of AP-1 activity by 2,3,7,8-tetrachlorodibenzo-p-dioxin-mediated B cell dysfunction. Toxicol Appl Pharmacol 181(2):116-123.
• Sulentic CE, Na YJ, Oestreich JH, Holsapple MP, Kaminski NE. 2002. 2,3,7,8-tetrachlorodibenzo-p-dioxin inhibits transcriptional activity of the 3'alpha enhancer in lipopolysaccharide-stimulated CH12.LX B-cells. Environ Health Perspect 66(1-S):
• Trosko JE. 2002. Up-regulation of cell-cell communication in the prevention/chemotherapy of cancer cells. In: Chemicals in the 21^st Century: Chemicals for a sustainable Development, (H.R.H. Prrincess Chulabhorn, ed.,) Trinity Publishing Co., , Thailand. Trinity Publishing Co, Bangkok, Thailand. pp.180-186.
• Trosko JE, Chang C. 2002. Epigenetic --toxicant induced modulated gap junctional intercellular communication. In: Comprehensive Toxicology: Cellular and Molecular Toxicology. Elserier Publishing, Amsterdam, Netherlands. pp.409-420.
• Trosko JE, Chang C, Upham BL. 2002. Modulation of gap junctional communication by 'epigenetic toxicants': A shared mechanism in teratogenesis, carcinogenesis, atherogenesis, immunomodulation, reproductive- and neuro-toxicities. In: Biomarkers of Environmentally Associated Disease: Technologies, Concepts, and Perspectives. CRC Press Company, Boca Raton, FL. pp.445-454.
• Upham BL, Davis JM, Trosko JE, Schwartz KA. 2002. Polycyclic aromatic hydrocarbons with bay-like structures inhibited gap junctional intercellular communication in neonatal rat cardiomyocytes and caused asynchronous beating. Toxicol Sci 00:1410.
• Villeneuve DL, Khim JS, Kannan K, Giesy JP. 2002. Relative potencies of individual polycyclic aromatic hydrocarbons to induce dioxinlike and estrogenic responses in three cell lines. Environ Toxicol Chem 17:128-137. PMID:11979591
• Villeneuve DL, Villalobos SA, Keith TL, Snyder EM, Fitzgerald SD, Giesy JP. 2002. Effects of waterborne exposure to 4-nonylphenol on plasma sex steroid and vitellogenin concentrations in sexually mature male carp (Cyprinus carpio). Chemosphere 47(1):15-28. PMID:11996132
• Wang XQ, Fang J, Nunez AA, Clemens LG. 2002. Developmental exposure to polychlorinated biphenyls affects sexual behavior of rats. Physiol Behav 75(5):689-696. PMID:12020734
• Weber WJ, Kim S, Johnson MD. 2002. Distributed reactivity model for sorption by soils and sediments 15 High-concentration co-contaminant effects on phenanthrene sorption and desorption. Environ Sci Technol 36(16):3625-3634. PMID:12214658

2001

• Adriaens P, Barcelona MJ, Hayes KF, McCormick ML, Skubal KL. 2001. Biotic and Abiotic Dechlorination in Iron-Reducing and Sulfidogenic Environments. In: Proceedings of the Sixth International Bioremediation Symposium on In Situ and On-site Bioremediation, June 4-7. San Diego, CA. pp.193-199.
• Bae J, Mousa MA, Quensen JF, Boyd SA, Loch-Caruso R. 2001. Stimulation of contraction of pregnant rat uterus in vitro by non-dechlorinated and microbially dechlorinated mixtures of polychlorinated biphenyls. Environ Health Perspect 109(3):275-282. PMID:11333189
• Birdsall K, Kukor JJ, Cheney MA. 2001. Uptake of polycyclic aromatic hydrocarbon compounds by the gills of the bivalve mollusk Elliptio complanata. Environ Toxicol Chem 20(2):1031-1036. PMID:11351430
• Blaha L, Machala M, Vondracek J, Neca J, Upham BL. 2001. In vitro assessment of non-genotoxic effects of polycyclic aromatic hydrocarbons. Toxicology 164:154-155.
• Bradford SA, Abriola LM. 2001. Dissolution of residual tetrachloroethylene in fractional wettability porous media: Incorporation of interfacial area estimates. Water Resour Res 37(5):1183-1195.
• Cheney MA, Birdsall K, Kukor JJ. 2001. Uptake and diverse effects of polycyclic aromatic hydrocarbons on the metabolic activity of Elliptio complanata measured by calorespirometry. Environ Toxicol Chem 20:1031-1036. PMID:11337865
• Gardner E, Huntoon KM, Pinnavaia TJ. 2001. Direct synthesis of alkoxide – intercalated derivatives of hydrotalcite - like layered double hydroxides: precursors for the formation of colloidal LDH suspensions and transparent thin films. Advanced Materials 13:1263.
• Gullick RW, Weber WJ. 2001. Evaluation of shale and organoclays as sorbent additives for low-permeability containment barriers. Environ Sci Technol 35(7):1523-1530. PMID:11348096
• Herner HA, Trosko JE, Masten S. 2001. The epigenetic toxicity of pyrene and related ozonation byproducts containing an aldehyde functional group. Environ Sci Technol 35(17):3576-3583. PMID:11563667
• Ijdo WL, Pinnavaia TJ. 2001. Amphiphilic layered silicate clay for the efficient removal of organic pollutants from water. Green Chem 3(1):10-12.
• Johnson MD, Weber WJ. 2001. Rapid prediction of long-term rates of contaminant desorption from soil and sediments. Environ Sci Technol 35:427-433. PMID:11347621
• Kahng H, Malinverni J, Majko MM, Kukor JJ. 2001. Genetic and functional analysis of the tbc operons for catabolism of alkyl- and chloroaromatic compounds in Burkholderia sp strain JS150. Appl Environ Microbiol 67(10):4805-4816. PMID:11571188 PMCID:PMC93235
• Kim SS, Pinnavaia TJ. 2001. A low cost route to hexagonal mesostructured carbon molecular sieves. Chem Commun (Camb) 2418. PMID:12239994
• Masten S, Tian M, Upham BL, Trosko JE. 2001. Effect of selected pesticides and their ozonation by-products on gap junctional intercellular communication using rat liver epithelial cell lines. Chemosphere 44(3):457-465. PMID:11459151
• Mori Y, Pinnavaia TJ. 2001. Optimizing organic functionality in mesostructured silica: direct assembly of mercaptopropyl groups in wormhole framework structures. Chemistry of Materials 13(6):2173.
• Mukherji S, Weber WJ. 2001. Mass transfer effects on microbial uptake of napthalene from complex NAPLs. Biotechnol Bioeng 75(1):130-140. PMID:11536135
• Nam K, Rodriguez W, Kukor JJ. 2001. Enhanced degradation of polycyclic aromatic hydrocarbons by biodegradation combined with a modified Fenton reaction. Chemosphere 45(1):11-20. PMID:11572585
• Olivero J, Ganey PE. 2001. Participation of Ca2+/calmodulin during activation of rat neutrophils by polychlorinated biphenyls. Biochem Pharmacol 62:1125-1132. PMID:11597581
• Park J, Chen Y, Kukor JJ, Abriola LM. 2001. Influence of substrate exposure history on biodegradation in a porous medium. J Contam Hydrol 51(3-4):233-256. PMID:11588828
• Park J, Kukor JJ, Abriola LM. 2001. TCE inducibility, cometabolism, and toxicity in Ralstonia pickettii PKO1 at high TCE concentrations. In: Proceedings of the American Society for Microbiology, 101st General Meeting. Orlando, FL.
• Rodrigues JM, Aiello MR, Quensen JF, Maltseva OV. 2001. Degradation of products from anerobic dechlorination of Aroclor 1242 in contaminated sediment using two recombinant bacteria. In: Proceedings of the American Society for Microbiology, 101st General Meeting. Orlando, FL.
• Rodrigues JM, Maltseva OV, Tsoi TV, Helton RR, Quensen JF, Fukuda M, Tiedje JM. 2001. Development of a Rhodococcus recombinant strain for degradation products from anaerobic dechlorination of PCBs. Environ Sci Technol 35(4):663-668. PMID:11349275
• Ruch RJ, Trosko JE, Madhukar BV. 2001. Inhibition of connexin43 gap junctional intercellular communication by TPA requires ERK activation. J Cell Biochem 83(1):163-169. PMID:11500965
• Sepulveda-Torres Ld, Zhou J, Guasp C, Lalucat J, Knaebel D, Plank JL, Criddle CS. 2001. Pseudomonas sp strain KC represents a new genomovar within Pseudomonas stutzeri. Int J Syst Evol Microbiol 51(Pt6):2013-2019. doi:10.1099/00207713-51-6-2013 PMID:11760942
• Trosko JE. 2001. Commentary: is the concept of "tumor promotion" a useful paradigm?. Mol Carcinog 30(3):131-137. PMID:11301473
• Trosko JE. 2001. Dietary modulation of gap junctonal communication during the rate limiting step of the initiation/promotion/progression process of carcinogenesis. Mutat Res 483:S7.
• Trosko JE. 2001. Gap junctional intercellular communication: A 'Biological Rosetta Stone' concept for understanding 'Epigenetic' toxicology. In: Proceedings of the Asian Society of Toxicology.
• Trosko JE. 2001. Modulation of gap junctional communication by 'epigenetic' toxicants: A shared mechanism in teratogenesis, atherogenesis, carcinogenesis, reproductive-, immuno- and neuro-toxicities. In: Arctic Development, Pollution and Biomarkers of Human Health. Elsevier Science Publishers, Amsterdam, Netherlands.
• Trosko JE. 2001. Up-regulation of cell-cell communication in the chemoprevention/chemotherapy of cancer cells. In: Proceedings of the Fourth Princess Chulabhorn International Science Congress, Chemicals in the 21st Century.
• Trosko JE, Kwan K, Upham BL, Halgren R, Zacharewski TR, Chang C. 2001. Stem cell biology in toxicology. Toxicol Sci 60:150.
• Upham BL, Rummel AM, Carbone JM, Trosko JE, Ouyang Y, Kaminski NE. 2001. Cannabinoids inhibited gap junctional intercellular communication and activated extracellular receptor kinase in a rat liver epithelial cell line. Toxicol Sci 60:750.
• Upham BL, Trosko JE, Hirose I, Hasegawa R, Kanno J, Inoue T, Sai K. 2001. Structure-activity relationships of perfluorinated fatty acids on gap junctional intercellular communication and MAPK using in vivo and in vitro model systems. Toxicol Sci 60:746.
• Upham BL, Wagner JG. 2001. Toxicological Highlight: Toxicant-induced oxidative stress in cancer. Toxicol Sci 64:1-3.

2000

• Bradford SA, Phelan TJ, Abriola LM. 2000. Dissolution of residual tetrachloroethylene in fractional wettability porous media: Correlation development and application. J Contam Hydrol 45(1-2):35-61.
• Fang J, Chung Y, Clemens LG. 2000. Relation of Fos-IR expression in the pelvic ganglion to sexual behavior in laboratory rats. Behav Neurosci 114(3):543-552. PMID:10883804
• Ganey PE, Olivero-Verbal J, Madhukar BV. 2000. Mechanism of inhibition of stimulated neutrophil degranulation by 2,2',4,4'-tetrachlorobiphenyl. Toxicol Sci 54:77.
• Ganey PE, Quensen JF, Mousa MA, Boyd SA, Wagner JG, Fischer L. 2000. Biological activity associated with noncoplanar polychlorinated biphenyls after microbial dechlorination of Aroclor 1242 and Aroclor 1254. Environ Toxicol Chem 19:1311-1316.
• Hyndman DW, Dybas MJ, Forney L, Heine R, Mayotte T, Phanikumar MS, Tatara G, Tiedje JM, Voice TC, Wallace RB, Wiggert D, Zhao X, Criddle CS. 2000. Hydraulic characterization and design of a full-scale biocurtain. Ground Water 38(3):462-474.
• Jacobs JM, Loconto PR, Hawley MC. 2000. Analytical Methods for Sugar Hydrogenolysis. In: Proceedings of the 51st Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy. New Orleans, LA. pp.2095P.
• Kahng H, Byrne AM, Olsen RH, Kukor JJ. 2000. Characterization and role of tbuX in utilization of toluene by Ralstonia pickettii PKO1. J Bacteriol 182(5):1232-1242. PMID:10671442 PMCID:PMC94407
• Kahng H, Kukor JJ, Oh K. 2000. Characterization of strain HY99, a novel microorganism capable of aerobic and anaerobic degradation of aniline. FEMS Microbiol Lett 190(2):215-221. PMID:11034282
• Kahng H, Kukor JJ, Oh K. 2000. Physiological and phylogenetic analysis of Burkholderia sp. HY1 capable of aniline degradation. J Microbiol Biotechnol 10:643-650.
• Kahng H, Nam K, Berger A, Suarez P, Kukor JJ. 2000. Structural analyses of microbial communities from PAH-contaminated soils. In: Proceedings of the American Society for Microbiology 100^th general meeting. pp.Q-203.
• Kahng H, Nam K, Kukor JJ, Oh K. 2000. Catabolic potential of Pseudomonas rhodesiae strain KK1 isolated from PAH-contaminated soil at a former manufactured gas plant (MGP) facility. In: Proceedings of the 55th Annual Meeting of the Korean Association of Biological Sciences. Taejon, Korea, pp.B-308.
• Lueking AD, Huang WL, Soderstrom-Schwarz S, Kim M, Weber WJ. 2000. Relationship of soil organic matter characteristics to organic contaminant sequestration and bioavailability. J Environ Qual 29:317-323.
• Madhukar BV, Zeng XY, Hernandez O. 2000. Activation of extracellular signal regulated kinases (ERKs) by polychlorinated biphenyls in MCF-7 human breast cancer cells. In: Proceedings of the 1^st PCB Workshop: Recent Advances in the Environmental Toxicology and Health Effects of PCBs (polychlorinated biphenyls), 2000. Lexington, KY. pp.no.30.
• Madhukar BV, Zeng XY, Hernandez O. 2000. Activation of extracellular signal-regulated kinases (ERKs) by 2,2',4,4'-tetrachlorobiphenyl in rat liver cells: Role of calcium. Environ Health Perspect 54:210.
• Maltseva OV, Rodrigues JM, Quensen JF, Tsoi TV, Tiedje JM. 2000. Growth of Burkholderia sp. LB400 and recombinant LH400(ohb) on simulated anaerobic dechlorination products from Aroclor 1242. In: Proceedings of the American Society for Microbiology 100^th general meeting. pp.149.
• McKarns SC, Kaminski NE. 2000. Evidence for a role by SMADS in TGF-1-induced modulation of T-cell effector function. Environ Health Perspect 54:303.
• McKarns SC, Kaminski NE. 2000. TGF-beta(1) differentially regulates IL-2 expression and [H-3]-thymidine incorporation in CD3 epsilon mAb- and CD28 mAb-activated splenocytes and thymocytes. Immunopharmocology 48(2):101-115. PMID:10936508
• Nam K, Kahng H, Kukor JJ. 2000. Determination of the biodegradation potential of polycyclic aromatic hydrocarbons at a former manufactured gas plant site. In: Proceedings of the American Society for Microbiology 100^th general meeting. pp.Q-201.
• Nam K, Kukor JJ. 2000. Combined ozonation and biodegradation for remediation of mixtures of polycyclic aromatic hydrocarbons in soil. Biodegradation 11:1-9. PMID:11194968
• Nam K, Kukor JJ. 2000. Enhanced degradability of polycyclic aromatic hydrocarbons by combined chemical oxidation and biodegradation. In: Case Studies in the Remediation of Chlorinated and Recalcitrant Compounds. Battelle Press, Columbus, OH. pp.197-204.
• Olivero-Verbal J, Ganey PE. 2000. A common elecrotopological motif among organochlorine compounds that activate neutrophils. Toxicol Sci 54:77.
• Olivero-Verbal J, Ganey PE. 2000. Role of protein phosphorylation in activation of phospholipase A2 by the polychlorinated biphenyl mixture Aroclor 1242. Toxicol Appl Pharmacol 163:9-16. PMID:10662600
• Prak DL, Abriola LM, Weber WJ, Bocskay KA, Pennell KD. 2000. Solubilization rates of n-alkanes in micellar solutions of nonionic surfactants. Environ Sci Technol 34(3):476-482. doi:10.1021/es9903431
• Quensen JF, Tsoi TV, Maltseva OV, Rodrigues JM, Zwiernik MJ, Tiedje JM. 2000. Strategies for the anaerobic/aerobic biotreatment of polychlorinated biphenyls. In: Proceedings of the Society of Environmental Toxicology and Chemistry, 21st Annual Meeting, 12-16 November. Nashville, TN. pp.56.
• Rodrigues JM, Aiello MR, Maltseva OV, Tsoi TV, Tiedje JM. 2000. A flourescent PCR-based method to quantify the recombinant Rhodococcus sp. strain RHA1 in soil. In: Proceedings of the American Society for Microbiology, 100th General Meeting, 21-25 May. Los Angeles, CA. pp.170.
• Sai K, Kanno J, Hasegawa R, Trosko JE, Inoue T. 2000. Prevention of the down-regulation of gap junctional intercellular communication by green tea in the liver of mice fed pentachlorophenol. Carcinogenesis 21:1671-1676. PMID:10964098
• Sheng G, Boyd SA. 2000. Polarity effect on dichlorobenzene sorption by hexadecyltrimethylammonium-clays. Clays and Clay Minerals 48:43-50.
• Suh J, Kang J, Yang K, Kaminski NE. 2000. Antagonistic effects of di-ortho polychlorinated biphenyls on aryl hydrocarbon receptor-dependent CYP1A1 and IgM gene expressions in CH12.LX B cells. Environ Health Perspect 54:279.
• Tiedje JM. 2000. Putting novel microbes to work on industry wastes. In: Proceedings of the Symposium for Japan Bioindustry Association. pp.47-54.
• Tithof PK, Olivero J, Ruehle K, Ganey PE. 2000. Activation of neutrophil calcium-dependent and -independent phospholipases A2 by organochlorine compounds. Toxicol Sci 53(1):40-47. PMID:10653519
• Trosko JE, Chang C, Wilson MR, Upham BL, Hayashi T, Wade M. 2000. Gap junctions and the regulation of cellular functions of stem cells during development and differentiation. Methods 20(2):245-264. PMID:10671317
• Tsoi TV, Cole JR, Rech S, Tiedje JM. 2000. Molecular Analysis Implicates Existence Of Two Differing Mechanisms Of Aryl Reductive Ortho-Dehalogenation In Coryneform Bacterium Strain KZ-4. In: Proceedings of the American Society for Microbiology 100^th general meeting.
• Yang L, Clemens LG. 2000. MPOA lesion affect female pacing of copulation in rats. Behav Neurosci 114(6):1191-1202. PMID:11142651
• . 2000. Writing about Health Risks:. In: A Handbook for Journalists. American Council on Science and Health, pp.77.

1999

• Abriola LM, Park J, Chen Y, Kukor JJ. 1999. Exploring the dependence of PKO1 degradative activity on substrate exposure history in porous media. In: Proceedings of the 4th International Symposium on Subsurface Microbiology, August 22-27. Vail, CO.
• Abriola LM, Pennell KD, Weber WJ, Lang JR, Wilkins MD. 1999. Persistence and interphase mass transfer of organic contaminants in the unsaturated zone: Experimental observations and mathematical modeling. In: Vadose Zone Hydrology; Cutting Across Disciplines. Oxford University Press, New York, NY. pp.210-234.
• Bae J, Peters-Golden M, Loch-Caruso R. 1999. Stimulation of pregnant rat uterine contraction by the polychlorinated biphenyl (PCB) mixture Aroclor 1242 may be mediated by arachidonic acid release through activation of phospholipase A2 enzymes. J Pharmacol Exp Ther 289:1112-1120. PMID:10215694
• Bae J, Stuenkel E, Loch-Caruso R. 1999. Stimulation of oscillatory uterine contraction by the PCB mixture Aroclor 1242 may involve increased [Ca2+]i through voltage-operated calcium channels. Toxicol Appl Pharmacol 155(3):261-272. PMID:10079212
• Boyd SA, Sheng G. 1999. Contaminant plume management utilising in situ organoclay sorbent zones. In: Natural Microporous Materials in Environmental Technology. Kluwer Academic Publishers, Netherlands. pp.71-83.
• Bradford SA, Vendlinski RA, Abriola LM. 1999. The entrapment and long-term dissolution of tetrachloroethylene in fractional wettability porous media. Water Resour Res 35(10):2955-2964.
• Chung Y, Clemens LG. 1999. Effects of perinatal exposure to polychlorinated biphenyls on development of female sexual behavior. Bull Environ Contam Toxicol 62(6):664-670. PMID:10353990
• Fang J, Clemens LG. 1999. Contextual determinants of female-female mounting in laboratory rats. Animal Behaviour 57:545-555. PMID:10196044
• Fang J, Clemens LG. 1999. Vaginocervical stimulation inhibits female-female mounting in laboratory rats. Physiol Behav 67:75-79. PMID:10463631
• Fischer L, Wagner MA, Madhukar BV. 1999. Potential involvement of calcium, CaM kinase II and MAP kinases in PCB-stimulated insulin release from RINm5F cells. Toxicol Appl Pharmacol 159:194-203. PMID:10486306
• Ghoshal S, Weber WJ, Rummel AM, Trosko JE, Upham BL. 1999. Epigenetic toxicity of a mixture of polycyclic aromatic hydrocarbons on gap junctional intercellular communication before and after biodegradation. Environ Sci Technol 33:1044-1050.
• Hrywna Y, Tsoi TV, Maltseva OV, Quensen JF, Tiedje JM. 1999. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl Environ Microbiol 65(5):2163-2169. PMID:10224015
• Kukor JJ. 1999. In situ bioremediation of fuel hydrocarbons and chlorinated solvents in suboxic aquifer environments: What controls microbial activity?. In: Environ Toxicol. New Jersey Corporation for Advanced Technology, Trenton, NJ. pp.pp.117-129.
• Maltseva OV, Tsoi TV, Quensen JF, Fukuda M, Tiedje JM. 1999. Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation 10(5):363-371. PMID:10870552
• Miles-Richardson S, Kramer VJ, Fitzgerald SD, Render J, Barbee S, Giesy JP. 1999. Effects of waterborne exposure of 17 beta-estradiol on secondary sex characteristics and gonads of fathead minnows (Pimephales promelas). Aquat Toxicol 47(2):129-145. doi:10.1016/S0166-445X(99)00009-0
• Miles-Richardson S, Pierens SL, Nichols KM, Kramer VJ, Giesy JP. 1999. Effects of waterborne exposure to 4-nonylphenol and nonylphenol ethoxylate on secondary sex characteristics and gonads of fathead minnows (Pimephales promelas). Environ Res 80(2):S122-S137. doi:10.1006/enrs.1998.3945 PMID:10092426
• Park J, Fathepure SL, Chen Y, Kukor JJ, Abriola LM. 1999. Effects of substrate concentration history on expression of toluene degradative activities of Ralstonia pickettii PKO1 in a laboratory sand column. In: Proceedings of the 99^th General American Society for Microbiology Meeting. Chicago, IL.
• Peters CA, Mukherji S, Weber WJ. 1999. UNIFAC modeling of multicomponent nonaqueous phase liquids containing polycyclic aromatic hydrocarbons. Environ Toxicol Chem 18:426-429.
• Rummel AM, Trosko JE, Wilson MR, Upham BL. 1999. Polycyclic aromatic hydrocarbons with bay-like regions inhibited gap junctional intercellular communication and stimulated MAPK activity. Toxicol Sci 49:232-240. PMID:10416268
• Sepulveda-Torres Ld, Rajendran N, Dybas MJ, Criddle CS. 1999. Generation and initial characterization of Pseudomonas stutzeri KC mutants with impaired ability to degrade carbon tetrachloride. Arch Microbiol 171(6):424-429. PMID:10369898
• Sheng G, Boyd SA. 1999. A dual function organoclay sorbent for lead and chlorobenzene. Soil Science Society of America Journal 63:73-78.
• Tsoi TV, Cole JR, Maltseva OV, Rech S, Quensen JF, Rodrigues JM, Spain J, Tiedje JM. 1999. Promiscuous Dehalogenating Dioxygenase (ISP) From Pseudomonas aeruginosa 142: Evolutionary Model And Metabolic Engineering Tool. In: Proceedings of the International Symposium Pseudomonas. Maui, HI.
• Tsoi TV, Plotnikova EG, Cole JR, Guerin WF, Bagdasarian M, Tiedje JM. 1999. Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Appl Environ Microbiol 65(5):2151-2162. PMID:10224014 PMCID:PMC91311
• Urbance JW, Kukor JJ, Tiedje JM. 1999. Analysis of the phylogenetic distribution of biodegradative bacteria. In: Proceedings of the International Symposium Pseudomonas. Maui, HI.
• Voice TC, Zhao X, Shi J, Hickey RF. 1999. Biological activated carbon fluidized-bed system to treat gasoline groundwater. In: Proceedings of the International In Situ and On-site Bioreclamation Symposium. San Diego, CA.
• Witt ME, Dybas MJ, Wiggert D, Criddle CS. 1999. Use of bioaugmentation for continuous removal of carbon tetrachloride in model aquifer columns. J Environ Eng (New York) 16(6):475-485.
• Witt ME, Dybas MJ, Worden RM, Criddle CS. 1999. Motility-enhanced bioremediation of carbon tetrachloride-contaminated aquifer sediments. Environ Sci Technol 33:2958-2964.
• Ye D, Quensen JF, Tiedje JM, Boyd SA. 1999. 2-Bromoethanesulfonate, sulfate, molybdate, and ethanesulfonate inhibit anaerobic dechlorination of polychlorobiphenyls by pasteurized microorganisms. Appl Environ Microbiol 65:327-329. PMID:9872802
• Zhou J, Tiedje JM. 1999. Development of phylogenetic probes specific to Burkholderia cepacia G4. In: Proceedings of the International In Situ and On-site Bioreclamation Symposium. San Diego, CA. pp.65-75.

1998

• Abriola LM, Bradford SA. 1998. Experimental investigations of the entrapment and persistence of organic liquid contaminants in the subsurface environment. Environ Health Perspect 106(4):1083-1095. PMID:9703497
• Ankley GT, Giesy JP, Kendall RJ. 1998. Weight of evidence. Chapter 16. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
• Ankley GT, Mahaich E, Stahl R, Tillitt DE, Colborn T, McMaster S, Miller R, Bantle J, Campbell P, Denslow ND, Dickerson RL, Folmar LC, Fry M, Giesy JP, Gray LE, Guiney PD, Hutchinson T, Kennedy SP, Kramer VJ, LeBlank G, Mayes M, Nimrod A, Patino R, Peterson R, Purdy R, Ringer R, Thomas P, Touart L, Van Der Kraak G, Zacharewski TR. 1998. Overview of a workshop on screening methods for detecting potential (anti-) estrogenic/androgenic chemicals in wildlife. Environ Toxicol Chem 17(1):68-87.
• Bradford SA, Abriola LM. 1998. Entrapment and dissolution of organic liquids in chemically heterogeneous porous media. In: Groundwater Quality: Remediation and Protection, Proceedings of an International Conference of the International Association of Hydrological Sciences. Tubingen, Germany. pp.pp.167-172.
• Bradford SA, Abriola LM, Rathfelder KM. 1998. Simulated entrapment and dissolution of organic liquids in chemically heterogeneous porous media. In: Enviromeet 98 - Behavior and Remediation of Nonaqueous Phase Contaminants in the Subsurface. University of California, Irvine, CA. pp.pp.7-16.
• Dukelow WR, Clemens LG. 1998. Nonhuman primate in vitro fertilization applications to toxicology. In: Proceedings of the 11^th Primate Symposium, Muenster, Germany. Waxman Verlag, Muenster, Germany.
• Dybas MJ, Barcelona MJ, Bezborodnikov S, Davies S, Forney L, Kawka O, Mayotte T, Sepulveda-Torres Ld, Smalla K, Sneathen M, Tiedje JM, Voice TC, Wiggert D, Witt ME, Criddle CS. 1998. Pilot-scale evaluation of bioaugmentation for in situ remediation of a carbon tetrachloride-contaminated aquifer. Environ Sci Technol 32(22):3598-3611.
• Feyk LL, Giesy JP. 1998. Wildlife sentinels-xenoestrogen modulation of endocrine function in birds. Chapter 6. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
• Fischer L, Madhukar BV, Zeng XY, Wagner MA. 1998. Activation of MAP kinases by polychlorinated biphenyls in rat insulinoma cells: correlation with insulin release. Environ Health Perspect 42:133.
• Fischer L, Seegal R, Ganey PE, Pessah IN, Kodavanti PR. 1998. Symposium overview: toxicity of non-coplanar PCBs. Toxicol Sci 41(1):49-61. doi:10.1006/toxs.1997.2386 PMID:9520341
• Gardner E, Pinnavaia TJ. 1998. On the nature of olefin oxidation catalysts derived from molybdate- and tungstate-intercalated layered double hydroxides. Catal. A: General 167:65-74.
• Giesy JP, Snyder EM. 1998. Environmental endocrine disruption in fish: Weight of the evidence. Chapter 7. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
• Greenfeld CR, Wang XQ, Dukelow WR. 1998. Aroclor-1254 does not affect the IVF of cumulus-free mouse oocytes. Bull Environ Contam Toxicol 60(5):766-772. PMID:9595193
• Han SH, Yea SS, Jeon YJ, Yang K, Kaminski NE. 1998. Transforming growth factor-beta 1 (TGF-beta1) promotes IL-2 mRNA expression through the up-regulation of NF-kappaB, AP-1 and NF-AT in EL4 cells. J Pharmacol Exp Ther 287(3):1105-1112. PMID:9864299
• Hernandez O, Dukelow WR. 1998. Aroclor-1254 effects on the in vitro development of 8-cell mouse embryos. Bull Environ Contam Toxicol 60(5):773-780. PMID:9595194
• Ijdo WL, Pinnavaia TJ. 1998. Staging of organic and inorganic gallery cations in layered silicate heterostructures. Journal of Solid State Chemistry 139(2):281-289.
• Kannan K, Guruge KS, Thomas NJ, Tanabe S, Giesy JP. 1998. Butyltin residues in southern sea otters found dead along California coastal waters. Environ Sci Technol 32(9):1169-1175.
• Kannan K, Nakata H, Stafford R, Masson GR, Tanabe S, Giesy JP. 1998. Bioaccumulation and toxic potential of polychlorinated biphenyl congeners in biota collected at a superfund site contaminated with Aroclor 1268. Environ Sci Technol 32(9):1214-1221.
• Kannan K, Villenueve DA, Blankenship AL, Giesy JP. 1998. Interaction of tributyltin with 3,3',4,4',5-pentachlorobiphenyl-induced ethoxyresorufin O-deethylase activity in rat hepatoma cells. J Toxicol Environ Health A 55(5):373-384. PMID:9829560
• Kendall JJ, Brouwer A, Giesy JP. 1998. Wildlife conservation concerns and endocrine disruption in wildlife: A risk-based field and laboratory approach to assess effects. Chapter 1. In: Principles and Processes for Evaluating Endocrine Disruptors in Wildlife. SETAC Press, Pensacola, FL.
• Klasson-Wehler E, Bergman A, Auman H, Summer C, Murk T, van den Berg M, Kannan K, Giesy JP. 1998. Hydroxylated and methylsolfonyl PCBs in albatross from Midway Atoll, North Pacific Ocean. Environ Toxicol Chem 17(8):1620-1625.
• Koistinen J, Soimasuo R, Tukia K, Blankenship AL, Giesy JP. 1998. Induction of EROD activity in hepa-1 mouse hepatoma cells and estrogenicity in MCF-7 human breast cancer cells by extracts of pulp mill effluents, biosludge, and sediment exposed effluents. Toxicol Sci 17(8):1499-1507.
• Kramer VJ, Miles-Richardson S, Pierens SL, Giesy JP. 1998. Reproductive impairment and induction of alkaline-labile phosphate, a biomarker of estrogen exposure, in fathead minnows (Pimephales promelas) exposed to waterborne 17 beta-estradiol. Aquat Toxicol 40(4):335-360.
• Loconto PR, Pan Y, Kamdem P. 1998. Isolation and recovery of 2-aminoethanol , N-methyl-2-aminoethanol and N,N-dimethyl-2-aminoethanol from a copper amine aqueous matrix and from amine-treated sawdust using liquid-liquid extraction and liquid-solid extraction combined with capillary gas chromatography-ion-trap mass spectrometry. Journal of Chromatographic Science 36(6):299-305. PMID:9637017
• Madhukar BV. 1998. Modulation of protein kinases by xenobiotics. In: Toxicant-Receptor Interactions and Modulation of Gene Expression. Lippincott-Raven Publishers, Philadelphia, PA.
• Madhukar BV, Zeng XY, Fischer L. 1998. Polychlorinated biphenyls, transforming growth factor-alpha activate mitogen activated protein kinases in rat liver epithelial cells. Environ Health Perspect 42:133.
• Maltseva OV, Quensen JF, Tsoi TV, Tiedje JM. 1998. Intermediate products recently discovered to accumulate during the aerobic degradation of PCB congeners formed from anaerobic dechlorination of Aroclor 1242. In: Proceedings of the Superfund Basic Research Program: A Decade of Improving Health through Multi-Disciplinary Research. Chapel Hill, NC. pp.92.
• Maraqa MA, Zhao X, Wallace RB, Voice TC. 1998. Retardation coefficients of non-ionic organic compounds determined by batch and column techniques. Soil Science Society of America Journal 62(1):142-152.
• Mercier L, Pinnavaia TJ. 1998. A functionalized porous clay heterostructure for heavy metal ion (Hg²⁺) trapping. Microporous Mesoporous Mater 20:101-106.
• Mercier L, Pinnavaia TJ. 1998. Heavy metal ion adsorbents formed by the grafting of a thiol functionality to mesoporous silica molecular sieves: factors affecting Hg(II) uptake. Environ Sci Technol 32(18):2749-2754.
• Mousa MA, Ganey PE, Quensen JF, Madhukar BV, Chou K, Giesy JP, Fischer L, Boyd SA. 1998. Altered biological activity of commercial PCB mixtures due to microbial reductive dechlorination. In: Proceedings of the 17^th International Symposium on Chlorinated Dioxins and Related Compounds. pp.1-5.
• Narayanan PK, Carter WO, Ganey PE, Roth RA, Voytik-Harbin SL, Robinson JP. 1998. Impairment of human neutrophil oxidative burst by polychlorinated biphenyls: inhibition of superoxide dismutase activity. J Leukoc Biol 63:216-224. PMID:9468280
• Quensen JF, Mousa MA, Boyd SA, Sanderson J, Fruese KL, Giesy JP. 1998. Reduction in aryl hydrocarbon receptor-mediated activity of polychlorinated biphenyl mixtures due to anaerobic microbial dechlorination. Environ Toxicol Chem 17(5):806-813.
• Rakhshandehroo GR, Wallace RB, Boyd SA, Voice TC. 1998. Hydraulic characteristics of organomodified soils for use in sorptive zone applications. Soil Science Society of America Journal 62(1):5-12.
• Sanderson J, Giesy JP. 1998. Functional response assays in wildlife toxicology. In: Encyclopedia of environmental analysis and remediation. Wiley-Interscience,
• Sanderson J, Kennedy SW, Giesy JP. 1998. In vitro induction of ethoxyres orufin-O-deethylase and porphyrins by halogenated aromatic hydrocarbons in avian primary hepatocytes. Environ Toxicol Chem 17(10):2006-2018.
• Sheng G, Boyd SA. 1998. Relation of water and neutral organic compounds in the interlayers of mixed Ca/trimethylphenylammonium-smectites. Clays and Clay Minerals 46(1):10-17.
• Snyder SS, Villenueve DA, Pierens SL, Nichols KM, Snyder EM, Miles-Richardson S, Blankenship AL, Giesy JP. 1998. Monitoring for Complex Mixtures of Estrogen Agonists in the Aquatic Environment. In: Proceedings of the Superfund Basic Research Program: A Decade of Improving Health through Multi-Disciplinary Research. Chapel Hill, NC.
• Tithof PK, Peters-Golden M, Ganey PE. 1998. Distinct phospholipases A₂ regulate the release of arachidonic acid for eicosanoid production and superoxide anion generation in neutrophils. J Immunol 160:953-960. PMID:9551934
• Trosko JE, Chang C, Upham BL, Wilson MR. 1998. Epigenetic toxicology as toxicant-induced changes in intracellular signalling leading to altered gap junctional intercellular communication. Toxicol Lett 102-103:71-78. PMID:10022235
• Trosko JE, Ruch RJ. 1998. Cell-cell communication in carcinogenesis. Front Biosci (Landmark Ed) 3:d208-d236. PMID:9458335
• Upham BL, DeoCampo ND, Wurl B, Trosko JE. 1998. Inhibition of gap junctional intercellular communication by perfluorinated fatty acids dependent on the chain length of the fluorinated tail. Int J Cancer 78:491-495. PMID:9797139
• Upham BL, Weis LM, Trosko JE. 1998. Modulated gap junctional intercellular communication as a biomarker of PAH epigenetic toxicity: structure-function relationship. Environ Health Perspect 106:975-984. PMID:9703481
• Villenueve DA, Blankenship AL, Giesy JP. 1998. Estrogen receptors-environmental xenobiotics. Chapter 5. In: Toxicant-Receptor Interactions and Modulation of Gene Expression. Lippincott-Raven Publishers, Philadelphia, PA.
• Weber WJ, Mukherji S, Peters CA. 1998. Aqueous dissolution of the constituents of composite non-aqueous phase liquid contaminants. In: Soil and Aquifer Pollution. Springer-Verlag Publishers, Heidelberg, Germany.
• Weis LM, Rummel AM, Masten S, Trosko JE, Upham BL. 1998. Bay or bay-like regions of polycyclic aromatic hydrocarbons were potent inhibitors of gap junction intercellular communication. Environ Health Perspect 106(1):17-22.
• Yao JJ, Huang Z, Masten S. 1998. The ozonation of benzo[a]anthracene: Pathway and product identification. Water Res 32:3235-3244.
• Yao JJ, Huang Z, Masten S. 1998. The ozonation of pyrene: pathway and product identification. Water Res 32:3001-3012.
• Zwiernik MJ, Quensen JF, Boyd SA. 1998. FeSO₄ Amendments stimulate extensive anaerobic PCB dechlorination. Environ Sci Technol 32:3360-3365.

1997

• Abu-El-Sha'r W, Abriola LM. 1997. Experimental assessment of gas transport mechanisms in natural porous media: Parameter evaluation. Water Resour Res 4:505-515.
• Angus WG, Mousa MA, Vargas VM, Quensen JF, Boyd SA, Contreras ML. 1997. Inhibition of L-aromatic amino acid decarboxylase by polychlorinated biphenyls. Neurotoxicology 18:857-868. PMID:9339832
• Boyd SA, Kukkadaupa R. 1997. Method of removing organic contaminants from air and water with organophilic, quaternary phosphonium ion-exchanged smectite clays.
• Bradford SA, Abriola LM, Leij FJ. 1997. Estimating wettability effects on two- and three-fluid relative permeability relations. J Contam Hydrol 28:171-191.
• Bradford SA, Abriola LM, Phelan TJ. 1997. Dissolution of residual tetrachloroethylene in fractional wettability porous media. Agronomy Abstracts: Soil Science Society of America 178.
• Bradford SA, Abriola LM, Phelan TJ. 1997. The impact of fractional wettability and grain size distribution on the long-term dissolution of residual tetrachloroethylene. Eos, Transactions, American Geophysical Union 78:F331.
• Giesy JP. 1997. Trends and implications of chlorinated hydrocarbons in the Great Lakes. In: Great Lakes Fisheries Policy and Management: A Binational Perspective. Michigan State University Press, East Lansing, MI.
• Giesy JP, Jude DJ, Tillitt DE, Gale RW, Meadows JC, Zajieck JL, Peterman PH, Verbrugge DA, Sanderson J, Schwartz TR, Tuchman ML. 1997. Polychlorinated dibenzo-p-dioxins, dibenzofurans, biphenyls and 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in fishes from Saginaw Bay, Michigan. Environ Toxicol Chem 16(4):713-724. doi:10.1002/etc.5620160416
• Giesy JP, Kramer VJ, Bergman A, Klasson-Wehler E. 1997. Hydroxylated polychlorinated biphenyl metabolites are anti-estrogenic in a stably transfected human breast adenocarcinoma (MCF-7) cell line. In: Biotransformation in Environmental Risk Assessment. SETAC-Europe Press, Brussels, Belgium. pp.115-121.
• Gray LE, Klece WR, Wiese T, Tyl R, Gaido KW, Cook J, Klinefelter G, Desaulniers D, Wilson E, Zacharewski TR, Waller C, Foster P, Laskey J, Reel J, Giesy JP, Laws S, McLachlan JA, Breslin W, Cooper R, Di Giulio RT, Johnson R, Purdy R, Mihaich E, Safe SH, Sonnenschein C, Welshons W, Miller R, McMaster S, Colborn T. 1997. Endocrine screening methods workshop report: detection of estrogenic and androgenic hormonal and antihormonal activity for chemicals that act via receptor or steroidogenic enzyme mechanisms. Reprod Toxicol 11(5):719-750. PMID:9311581
• Hayden NJ, Voice TC, Wallace RB. 1997. Residual gasoline saturation in unsaturated soil with and without organic matter. J Contam Hydrol 25:271-281.
• Jeon YJ, Han SH, Yang K, Kaminski NE. 1997. Induction of transforming growth factor β1 transcription by carbon tetrachloride leads to the inhibition of T helper 2 cell associated lymphokines. Toxicol Appl Pharmacol 144:27-35.
• Johnson GR, Olsen RH. 1997. Multiple pathways for toluene degradation in Burkholderia sp. strain JS150. Appl Environ Microbiol 63(10):4047-4052. PMID:9327568
• Kamrin M. 1997. Environmental risk harmonization: Federal/state approaches to risk assessment and management. Regul Toxicol Pharmacol 25:158-165. PMID:9185891
• Kamrin M. 1997. Health effects of hazardous wastes. In: Standard Handbook of Hazardous Waste Treatment and Disposal, 2nd Edition. McGraw-Hill, London, England. pp.3.17-3.29.
• Kamrin M, Craigmill A, Miller T, Jenkins J, Rutz D. 1997. EXTOXNET: An internet pesticide information resource for non-specialists. In: Proceedings of the American Chemical Society National Meetings, Environmental Chemistry Division. San Francisco, CA.
• Kamrin M, Detjen J, Harry J. 1997. Improved Public Understanding of Environmental Risks Through Education and Information for Journalists. In: Proceedings of the Society for Environmental Toxicology and Chemistry Annual Meeting. San Francisco, CA.
• Kannan K, Tanabe S, Giesy JP. 1997. Organochlorine pesticides and polychlorinated biphenyls in foodstuffs from Asian and oceanic countries: contamination levels and dietary exposures. Rev Environ Contam Toxicol 152:1-55. PMID:9297984
• Kholkute SD, Dukelow WR. 1997. Effects of polychlorinated biphenyl (PCB) mixtures on in vitro fertilization in the mouse. Bull Environ Contam Toxicol 59(4):531-536. PMID:9307415
• Koistinen J, Koivusaari J, Nuuja I, Paasivarta J, Giesy JP. 1997. 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in extracts of Baltic White-Tailed Sea Eagles. Environ Toxicol Chem 16:1533-1544.
• Kramer VJ, Helferich WG, Bergman A, Klasson-Wehler E, Giesy JP. 1997. Hydroxylated polychlorinated biphenyl metabolites are anti-estrogenic in a stably transfected human breast adenocarcinoma (MCF7) cell line. Toxicol Appl Pharmacol 144(2):363-376. doi:10.1006/taap.1997.8163 PMID:9194421
• Leahy JG, Olsen RH. 1997. Kinetics of toluene degradation by toluene-oxidizing bacteria as a function of oxygen concentration and the effect of nitrate. FEMS Microbiol Lett 23:23-30.
• Leahy JG, Olsen RH, Johnson GR. 1997. Cross-regulation of toluene monooxygenases by the transcriptional activators TbmR and TbuT. Appl Environ Microbiol 63(9):3736-3739. PMID:9293027
• Loconto PR. 1997. Extraction and the distribution ratio. LC GC 15(2):92.
• Loconto PR. 1997. Isolation and recovery of 9,10-dimethyl-1,2-benzanthracene from animal bedding by reversed-phase solid-phase extraction combined with HPLC. J Chromatogr A 774(1,2):223-227.
• Loconto PR, Voice TC. 1997. Analytical chemistry in a graduate environmental engineering program at Michigan State. In: Proceedings of the 29^th Central Regional Meeting of the American Chemical Society.
• Madhukar BV, Trosko JE. 1997. The causes of cancer: implications for prevention and treatment. Indian Journal of Pediatrics 64:131-141. PMID:10771828
• Maraqa MA, Wallace RB, Voice TC. 1997. Effect of degree of water saturation on dispersivity and immobile water in sandy soil columns. J Contam Hydrol 25:199-218.
• Massol-Deya A, Weller R, Rios-Hernandez L, Zhou J, Hickey RF, Tiedje JM. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Appl Environ Microbiol 63(1):270-276. PMID:8979355
• Masten S, Davies S. 1997. Efficacy of in situ ozonation for the remediation of PAH contaminated soils. J Contam Hydrol 28:327-335.
• Mercier L, Pinnavaia TJ. 1997. Access in mesoporous materials: advantages of a uniform pore structure in the design of a heavy metal ion adsorbent for environmental remediation. Advanced Materials 9:500-503.
• Meyer TK, Yurchak MR, Pliego JF, Wincek TJ, Dukelow WR, Kuehl TJ. 1997. Cryopreservation of marine zygotes for use in testing culture environments. Journal of the American Association for Laboratory Animal Science 47(5):496-499. PMID:9355092
• Mukherji S, Peters CA, Weber WJ. 1997. Mass transfer of polynuclear aromatic hydrocarbons (PAHs) from complex DNAPL mixtures. Environ Sci Technol 31(2):416-423.
• Olsen RH, Kukor JJ, Byrne AM, Johnson GR. 1997. Evidence for the evolution of a single component phenol/cresol hydroxylase from a multicomponent toluene monooxygenase. J Ind Microbiol Biotechnol 19(5-6):360-368. PMID:9451833
• Olsen RH, Kukor JJ, Byrne AM, Johnson GR. 1997. Recruitment of an alkyl-substituted phenol/benzene regulated system for the evolution of a unit peptide phenol hydroxylase. In: Proceedings of the VI^th International Congress on Pseudomonas. pp.133.
• Peters CA, Mukherji S, Knightes CD, Weber WJ. 1997. Phase stability of multicomponent NAPLs containing PAHs. Environ Sci Technol 31(9):2540-2546.
• Quensen JF, Tiedje JM. 1997. Evaluation of PCB Dechlorination in Sediments. In: Methods in Biotechnology, V. 2: Bioremediation Protocols. Humana Press Inc, Totowa, NJ.
• Richter CA, Giesy JP, Tieber VL, Denison MS. 1997. An in vitro rainbow trout cell bioassay for AhR-mediated toxins. Environ Toxicol Chem 16:543-550.
• Rodriguez J, Kholkute SD, Dukelow WR. 1997. Reproductive toxicology of 3,3',4,4'-tetrachlorobiphenyl in mice. Bull Environ Contam Toxicol 58(6):999-1005. PMID:9136666
• Sanderson J, Janz DM, Bellward GD, Giesy JP. 1997. Effects of embryonic and adult exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin on hepatic microsomal testosterone hydroxylase activities in Great Blue Herons (Ardea herodias). Environ Toxicol Chem 16:1304-1310.
• Sheng G, Boyd SA. 1997. Organoclays/soil modification and their use in pollution prevention and environmental remediation. Nature Magz. China 19:95-104.
• Sheng G, Xu S, Boyd SA. 1997. Surface heterogeneity of trimethylphenylammonium-smectite as revealed by adsorption of aromatic hydrocarbons from water. Clays and Clay Minerals 45:659-669.
• Tithof PK, Watts S, Ganey PE. 1997. Protein tyrosine kinase involvement in the production of superoxide anion by neutrophils exposed to Aroclor 1242, a mixture of polychlorinated biphenyls. Biochem Pharmacol 53:1833-1842. PMID:9256158
• Tsai M, Webb RC, Loch-Caruso R. 1997. The increase of oxytocin-induced oscillatory contractions by 4-hydroxy-2',4',6'-trichlorobiphenyl is estrogen receptor-mediated. Biol Reprod 56(2):341-347. PMID:9116132
• Upham BL, Boddy B, Xing X, Trosko JE, Masten S. 1997. Non-genotoxic effects of selected pesticides and their disinfection by-products on gap junctional intercellular communication. Ozone: Science & Engineering 19(4):351-369.
• Upham BL, Kang K, Cho H, Trosko JE. 1997. Hydrogen peroxide inhibits gap junctional intercellular communication in glutathione sufficient but not glutathione deficient cells. Carcinogenesis 18(1):37-42. PMID:9054587
• Vethaak D, Jobling S, Waldock M, Bjerregaard P, Dickerson R, Giesy JP, Grothe D, Karbe L, Munkittrick KR, Schlumpf M, Sumpter J. 1997. Approaches for the conduct of field surveys and toxicity identification and evaluation in identifying the hazards of endocrine modulating chemicals in wildlife. In: Proceedings of the SETAC (Society of Environmental Toxicology and Chemistry)-Europe/OECD (Organisation for Economic Co-Operation and Development) Expert Workshop on (Endocrine Modulators and Wildlife: Assessment and Testing) EMWAT. SETAC-Europe, Brussels, Belgium. pp.13-23.
• Xu S, Sheng G, Boyd SA. 1997. Use of organo-clays in pollution abatement. Advances in Agronomy 59:25-61.
• Yao JJ, Masten S. 1997. The Identification of the products and reaction pathways for the ozonolysis of pyrene and benz[a]anthracene in aqueous solutions. In: Proceedings of the 13^th Ozone World Congress, Oct. 20-23. Kyoto, Japan.
• Zhao X, Doh K, Criddle CS, Voice TC. 1997. Accumulation of metabolic intermediates during shock loads in biological fluidized bed reactors. J Environ Eng (New York) 123:1185-1193.
• Zhou J, Palumbo AV, Tiedje JM. 1997. Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes. Appl Environ Microbiol 63(6):2384-2390. PMID:9172359 PMCID:PMC168532

1996

• Bae J, Loch-Caruso R. 1996. Stimulation of rat uterine oscillatory contraction by a polychlorinated biphenyl mixture, Aroclor 1242, and its sustained effect after removal of the compound. Biol Reprod 54(supp.):182.
• Beavens JS, Little RA, Madhukar BV. 1996. Altered subcellular distribution of protein kinase C (PKC) isozymes in C3H 10T1/2 mouse embryo cells exposed to halogenated aromatic hydrocarbons (HAH). In: Proceedings of the 35^thAnnual Meeting of the Society of Toxicology Meeting, March 10-14, 1996. Anaheim, CA.
• Benzing T, Rao P, Boyd SA. 1996. Construction and performance of a gas purge system. J Environ Qual 25:1436-1441.
• Bradford SA, Abriola LM, Vendlinski RA. 1996. Entrapment and dissolution of tetrachloroethylene in fractional wettability porous media. Eos, Transactions, American Geophysical Union 77:F274-F275.
• Brown AP, Schultze AE, Holdan W, Buchweitz JP, Roth RA, Ganey PE. 1996. Lipopolysaccharide-induced hepatic injury is enhanced by polychlorinated biphenyls. Environ Health Perspect 104(6):634-640. PMID:8793352
• Byrne AM, Olsen RH. 1996. Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UBVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT. J Bacteriol 178(21):6327-6337. PMID:8892837 PMCID:PMC178508
• Byrne AM, Olsen RH. 1996. Nucleotide sequence analysis of tbuX, a gene encoding a putative membrane-associated protein from Burkholderia pickettii PKO1. Bacteriology Procedures
• Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM. 1996. Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4. Appl Environ Microbiol 62(3):964-973. PMID:8975623
• Chibwe M, Ukrainczyk L, Boyd SA, Pinnavaia TJ. 1996. Catalytic properties of biomimetic metallo macrocycles intercalated in layered double hydroxides and smectite clay: the importance of edge-site access. J Mol Catal A Chem 113:249-256.
• Chung Y, Clemens LG. 1996. The effect of postnatal exposure of polychlorinated biphenyls (Aroclor 1254) on the sexual behavior of rats. In: Proceedings of the Society for Neuroscience.
• Delaney B, Kaminski NE. 1996. Liver-Immune interactions induced by hepatic regeneration: Similarities between partial hepatectomy and chemically-mediated hepatotoxicity. In: Experimental Immunotoxicology. CRC Press Inc, Boca Raton, FL. pp.157-167.
• Dukelow WR, Greenfeld CR, Hernandez O, Clemens LG, Chung Y, Kaneene J. 1996. Toxic chemical influences on in vivo and in vitro reproduction. In: Proceedings of the Forum on Environmental Remediation & Environmental Toxicology. Lansing, MI.
• Dukelow WR, Hernandez O, Greenfeld CR, Kholkute SD. 1996. In vitro fertilization assessment of PCB effects in B6D2-F1 mice. In: Proceedings of the American Association of Laboratory Animal Science. pp.5.
• Gaither CL, Abriola LM. 1996. An experimental investigation of the volatilization of binary NAPL mixtures in unsaturated porous media. In: Proceedings of the Hazardous Substance Research Center (HSRC) / Waste-Management Education & Research Consortium Joint Conference on the Environment.
• Garrison PA, Tullis K, Aarts JM, Brouwer A, Giesy JP, Denison MS. 1996. Species-specific recombinant cell lines as bioassay systems for the detection of 2,3,7,8-tetrachlorodibenzo-p-dioxin-like chemicals. Fundam Appl Toxicol 30(2):194-203. PMID:8812265
• Giesy JP. 1996. Are Endocrine Disruptors Impacting Wildlife? A Review of the Evidence. In: Proceedings of the ILSI (International Life Sciences Institute ), Risk Science Institute, Brookings Institution and Society for Risk Analysis. Washington, DC.
• Giesy JP. 1996. Endocrine Modulation: Perspectives on Aquatic Exposure and Effects Testing. In: Proceedings of the Endocrine Modulators Forum at the 83^rd Annual meeting of the Chemical Specialties Manufacturers Association. Fort Lauderdale, FL.
• Giesy JP. 1996. Hydroxylated Polychlorinated Biphenyl Metabolites are Anti-estrogenic in a stably Transfected Human Breast Adenocarcinoma (MCF-7) Cell Line. In: Proceedings of the (Society of Environmental Toxicology and Chemistry) SETAC-Europe workshop: Biotransformation in Ecological Risk Assessment. Noordwijerhout, Netherlands.
• Giesy JP. 1996. Monitoring for Complex Mixtures of Estrogen Agonists and Antagonists in Aquatic Environments. In: Proceedings of the University of Guelph Toxicology Students' Association 11^th Annual Toxicology Symposium-- Endocrine Modulators: Are They Stealing Our Future?. Guelph, Canada.
• Giesy JP. 1996. Monitoring for Complex Mixtures of Estrogen Agonists in the Aquatic Environment: Development of Biomarkers and in vitro Assays and Determination of Effects in Fishes.
• Giesy JP. 1996. Principles for Assessing Effects on the Endocrine System: Field and Laboratory Research. In: Proceedings of a Scientific Panel Discussion on Endocrine Disruptors in the Environment. Kiawah Island, SC.
• Greenfeld CR, Hernandez O, Dukelow WR. 1996. Reproductive toxicity of a commercial PCB (Aroclor 1254) in the mouse. In: Proceedings of the Annual Research Day, Michigan State University (MSU) Department of Zoology.
• Han SH, Jeon YJ, Yang K, Kaminski NE. 1996. Induction of interleukin 2 gene expression by tranforming growth factor β1 in the murine T-cell line, EL4.IL-2. In: Proceedings of the 11^th Annual Symposium on Mechanisms of Immunotoxicology. Virginia Beach, VA.
• Hayashi T, Hasler CM, Oh SY, Madhukar BV, Chang C, Trosko JE. 1996. Characterization of an in vitro human kidney epithelial system to study gap junctional intercellular communication. In Vitr Mol Toxicol 9:3-17.
• Herner H, Nair M, Yao JJ, Masten S. 1996. The reaction of ozone with pyrene. In: Proceedings of the IOA (International Ozone Association) Pan American Conference: Applications and Optimization of Ozone for Potable Water Treatment, Sept. 8-11. Ottawa, Ontario, Canada.
• Ho JS, Buchweitz JP, Roth RA, Ganey PE. 1996. Identification of factors from rat neutrophils responsible for cytotoxicity to isolated hepatocytes. J Leukoc Biol 59:716-724. PMID:8656057
• Jaeschke H, Smith CW, Clemens MG, Ganey PE, Roth RA. 1996. Mechanisms of inflammatory liver injury: adhesion molecules and cytotoxicity of neutrophils. Toxicol Appl Pharmacol 139:213-226. PMID:8806837
• Kang K, Wilson MR, Hayashi T, Chang C, Trosko JE. 1996. Inhibition of gap junctional intercellular communication in normal human breast epithelial cells after treatment with pesticides, PCBs, and PBBs, alone or in mixtures. Environ Health Perspect 104(2):192-200. PMID:8820588 PMCID:PMC1469268
• Koistinen J, Sanderson J, Nevalainen T, Paasivarta J, Giesy JP. 1996. Ethoxyresorufin-o-deethylase (EROD) induction potency of polychlorinated diphenyl ethers (PCDE) in H4IIE rat hepatoma cells. Environ Toxicol Chem 15:2028-2034.
• Kramer VJ, Helferisch WT, Bergman C, Giesy JP. 1996. In vitro Estrogenicity and Anti-estrogenicity of Hydroxylated, Chlorinated Biphenyls in Human Brest Cancer Tumor (MCF-7) Cells. In: Proceedings of the Environmental Remediation and Toxicology Forum. Lansing, MI.
• Kukor JJ, Olsen RH. 1996. Catechol 2,3-dioxygenases functional in oxygen-limited (hypoxic) environments. Appl Environ Microbiol 62(5):1728-1740. PMID:8633871 PMCID:PMC167947
• Leahy JG, Byrne AM, Olsen RH. 1996. Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria. Appl Environ Microbiol 62(3):825-833. PMID:8975612
• Loch-Caruso R, Tsai M. 1996. Possible involvement of gap junctions in the development of spontaneous oscillatory contractions in uteri. Biol Reprod 54(supp.):118.
• Loconto PR, Pan Y, Voice TC. 1996. Determination of trace water in soils by automated indirect headspace gas chromatography. LC GC 14(2):128-132.
• Madhukar BV, de Feijter-Rupp H, Trosko JE. 1996. Pulse treatment with tumor promoter TPA delays the onset of desensitization response and prolongs the inhibitory effect on gap junctional intercellular communication of a rat liver epithelial cell line WB F-344. Cancer Lett 106:117-123. PMID:8827055
• Madhukar BV, Little RA, Beavens JS. 1996. Non-coplanar polychlorinated biphenyls (PCBs) induce AP-1 transcription factor-mediated expression of Luciferase activity. In: Proceedings of the 35^thAnnual Meeting of the Society of Toxicology Meeting, March 10-14, 1996. Anaheim, CA.
• Madhukar BV, Quensen JF, Mousa MA, Fischer L, Boyd SA. 1996. Induction of AP-1 transcription factor activity by polychlorinated biphenyls (PCBs) and their microbial metabolites. In: Proceedings of the Forum on Environmental Remediation & Environmental Toxicology. Lansing, MI. pp.351-352.
• Madhukar BV, Zeng XY. 1996. Induction of AP-1 transcription factor-mediated gene expression by polychlorinated biphenyls (PCBs) in a rat pituitary cell line GH3. In: Proceedings of the 35^thAnnual Meeting of the Society of Toxicology Meeting, March 10-14, 1996. Anaheim, CA.
• Mayotte T, Dybas MJ, Criddle CS. 1996. Bench-scale evaluation of bioaugmentation to remediate carbon tetrachloride-contaminated aquifer materials. Ground Water 34:358-367.
• Migaud ME, Chee-Sanford JC, Tiedje JM, Frost JW. 1996. Benzylfumaric, benzylmaleic, Z- and E-phenylitaconic acids: synthesis, characterization and correlation with a metabolite generated by Azoarcus tolulyticus strain Tol-4 during anaerobic toluene degradation. Appl Environ Microbiol 62(3):974-978. PMID:8975624
• Mousa MA, Angus WG, Quensen JF, Contreras ML, Boyd SA. 1996. Distribution of PCBs in PC12 cell culture system and relationship with the levels of DNA and Dopamine. In Vitr Mol Toxicol 9:215-221.
• Mousa MA, Quensen JF, Chou K, Boyd SA. 1996. Microbial dechlorination alleviates the inhibitory effects of PCBs on mouse gamete fertilization. Environ Sci Technol 30:2087-2092.
• Nomata K, Kang K, Hayashi T, Matesic D, Lockwood L, Chang C, Trosko JE. 1996. Inhibition of gap junctional intercellular communication in heptachlor- and heptachlor epoxide-treated normal human breast epithelial cells. Cell Biol Toxicol 12(2):69-78. PMID:8738476
• Olsen RH, Kukor JJ, Leahy JG, Johnson GR. 1996. "Natural" genetic engineering for the metabolism of trichloroethylene and xylene hydrocarbons in low-oxygen environments. In: Proceedings of the 35^th Hanford Symposium on Health and the Environment, Microbial Genome Research and its Applications. Richland, WA. pp.55-56.
• Sanderson J, Aarts JM, Brouwer A, Froese KL, Denison MS, Giesy JP. 1996. Comparison of Ah receptor-mediated luciferase and ethoxyresorufin-O-deethylase induction in H4IIE cells: implications for their use as bioanalytical tools for the detection of polyhalogenated aromatic hydrocarbons. Toxicol Appl Pharmacol 137(2):316-325. PMID:8661358
• Sheng G, Xu S, Boyd SA. 1996. Cosorption of organic contaminants from water by hexadecyltrimethylammonium-exchanged clays. Water Res 30:1483-1489.
• Sheng G, Xu S, Boyd SA. 1996. Mechanism(s) controlling sorption of neutral organic contaminants by surfactant-derived and natural organic matter. Environ Sci Technol 30:1553-1557.
• Starodub ME, Miller PA, Ferguson GM, Giesy JP, Willes RF. 1996. The use of risk assessment techniques to develop a protocol for determining acceptable concentrations of bioaccumulative chlorinated organic chemicals in sediments for the protection of piscivorous wildlife. Toxicol Sci 54:243-259. doi:10.1080/02772249609358316
• Stevens JJ, Anderson SJ, Boyd SA. 1996. FTIR study of competitive water-arene sorption on tetramethylammonium- and trimethylphenylammonium-montmorillonites. Clays and Clay Minerals 44:88-95.
• Tithof PK, Peters-Golden M, Schiamburg L, Ganey PE. 1996. Aroclor 1242 activates neutrophils by a mechanism which involves phospholipase A2. Environ Health Perspect 104:52-58.
• Trosko JE. 1996. Role of low-level ionizing radiation in multi-step carcinogenic process. Health Phys 70(6):812-822. PMID:8635905
• Trosko JE, Chang C, Madhukar BV, Dupont E. 1996. Intercellular communication: A paradigm for the interpretation of the initiation/promotion/ progression model of carcinogenesis. In: Chemical Induction of Cancer: Modulation and Combination Effects. Birkhauser Publisher, Boston, MA. pp.3.17-3.29.
• Tsai M, Webb RC, Loch-Caruso R. 1996. Congener-specific effects of PCBs on contractions of pregnant rat uteri. Reprod Toxicol 10(1):21-28. PMID:8998381
• Upham BL, Boddy B, Xing X, Trosko JE, Masten S. 1996. Non-genotoxic effects of selected pesticides and their disinfection by-products on gap junctional intercellular communication. In: Proceedings of the IOA (International Ozone Association) Pan American Conference: Applications and Optimization of Ozone for Potable Water Treatment, Sept. 8-11. Ottawa, Ontario, Canada.
• Upham BL, Weis LM, Rummel AM, Masten S, Trosko JE. 1996. The effects of anthracene and methylated anthracenes on gap junctional intercellular communication in rat liver epithelial cells. Fundam Appl Toxicol 34(2):260-264. PMID:8954755
• Wagner JG, Ganey PE, Roth RA. 1996. Nitric oxide is not involved in hepatocyte killing by neutrophils activated by N-formyl-methionyl-leucyl-phenylalanine or phorbol myristate acetate in vitro. Hepatology 23(4):803-810. PMID:8666335
• Weber WJ, Mukherji S, Peters CA. 1996. Aqueous Dissolution of the Constituents of Composite Non-Aqueous Phase Liquid Contaminants. In: Proceedings of the International Workshop: Soils and Aquifer Pollution (Non-Aqueous Phase Liquid Contamination and Reclamation). Haifa, Israel.
• Yao JJ, Nair M, Herner H, Masten S. 1996. The reaction of ozone with benzo[a]anthracene. In: Proceedings of the IOA (International Ozone Association) Pan American Conference: Applications and Optimization of Ozone for Potable Water Treatment, Sept. 8-11. Ottawa, Ontario, Canada.
• Yun SK, Pinnavaia TJ. 1996. Layered double hydroxides intercalated by polyoxometalate anions with Keggin (α-H₂W₁₂O₄₀^6-), Dawson (α-P₂W₁₈O₆₂^6-) and Finke (Co₄(H₂O)₂(PW₉O₃₄)₂^10-) structures. Inorg Chem 23:6853. PMID:11666853
• Zhou J, Bruns MA, Tiedje JM. 1996. DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316-322. PMID:8593035

1995

• Bradford SA, Leij FJ, Abriola LM. 1995. Estimation of two- and three-fluid relative permeability relations for fractional wettability media. Eos, Transactions, American Geophysical Union 76:45.
• Brown AP, Ganey PE. 1995. Neutrophil degranulation and superoxide production induced by polychlorinated biphenyl are calcium dependent. Toxicol Appl Pharmacol 131(2):198-205. PMID:7716762
• Byrne AM, Kukor JJ, Olsen RH. 1995. Sequence analysis of the gene cluster encoding toluene-3-monooxygenase from Pseudomonas pickettii PKO1. Gene 154(1):65-70. PMID:7867951
• Constantino VR, Pinnavaia TJ. 1995. Basic Properties of Mg²⁺1-xAl³⁺x layered double hydroxides intercalated by carbonate hydroxide chlorine and sulfate anions. Inorg Chem 34:883-892.
• Criswell KA, Loch-Caruso R. 1995. Lindane-induced elimination of gap junctional communication in rat uterine myocytes is mediated by an arachidonic acid-sensitive cAMP-independent mechanism. Toxicol Appl Pharmacol 135(1):127-138. PMID:7482532
• Criswell KA, Loch-Caruso R, Stuenkel E. 1995. Lindane inhibition of gap junctional communication in myometrial myocytes is partially dependent on phosphoinositide-generated second messenger. Toxicol Appl Pharmacol 130:280-293. PMID:7532876
• Dybas MJ, Tatara G, Criddle CS. 1995. Localization and characterization of the carbon tetrachloride transformation activity of Pseudomonas sp. strain KC. Appl Environ Microbiol 61(2):758-762. PMID:16534941
• Hendrickx AG, Dukelow WR. 1995. Breeding. Chap. 14. In: Nonhuman Primates in Biomedical Research: Biology and Management. Academic Press, Inc., New York, NY. pp.335-374.
• Hendrickx AG, Dukelow WR. 1995. Reproductive Biology. Chap. 9. In: Nonhuman Primates in Biomedical Research: Biology and Management. Academic Press, Inc., New York, NY. pp.147-191.
• Johnson GR, Olsen RH. 1995. Nucleotide sequence analysis of genes encoding a toluene/benzene-2-monooxygenase from Pseudomonas sp strain JS150. Appl Environ Microbiol 61(9):3336-3346. PMID:7574644 PMCID:PMC167614
• Kholkute SD, Rodriguez J, Dukelow WR. 1995. In vitro fertilization and the effect of progesterone and 17-a-hydroxyprogesterone on acrosome reaction of mouse epididymal spermatozoa. Int J Androl 18:146-150. PMID:7558378
• Kramer VJ, Giesy JP. 1995. Environmental estrogens: a significant risk?. Human and Ecological Risk Assessment: An International Journal 1:37-42.
• Loconto PR, Hussain N. 1995. Automated coupled ion-exclusion-ion chromatography for the determination of trace anions in fermentation broth. Journal of Chromatographic Science 33:75-81.
• Madhukar BV. 1995. Implication of growth factor and growth factor receptor modulation in dioxin toxicity. Organohalogen Compounds 25:377-380.
• Newsted JL, Giesy JP, Ankley GT, Tillitt DE, Crawford RA, Gooch JL, Jones PD, Denison MS. 1995. Development of toxic equivalency factors for PCB congeners and the assessment of TCDD and PCB mixtures in rainbow trout. Environ Toxicol Chem 14(5):861-871.
• Olsen RH, Mikesell MD, Kukor JJ, Byrne AM. 1995. Physiological attributes of microbial BTEX degradation in oxygen-limited environments. Environ Health Perspect 103(supp.5):49-51. PMID:8565910
• Pennell KD, Boyd SA, Abriola LM. 1995. Surface area of soil organic matter reexamined. Soil Science Society of America Journal 59(4):1012-1018.
• Pinnavaia TJ. 1995. Nanoporous layered materials. ACS Advances in Chemistry Series 245:283-300.
• Pinnavaia TJ, Chibwe M, Constantino VR, Yun SK. 1995. Organic chemical conversions catalyzed by intercalated layered double hydroxides. Appl Clay Sci 10:117-129.
• Shi J, Zhao X, Hickey RF, Voice TC. 1995. Role of adsorption in granular activated carbon fluidized bed reactors. Water Environ Res 67(3):302-309.
• Tiedje JM. 1995. New advances and challenges for bioremediation. In: Proceedings of Bioremediation: The Tokyo 1994 Workshop, OECD (Organisation for Economic Co-Operation and Development). Paris, France. pp.81-87.
• Tiedje JM, Sanford RA, Massol-Deya A. 1995. Advantages and disadvantages of consortia in bioremediation. In: Proceedings of Bioremediation: The Tokyo 1994 Workshop, OECD (Organisation for Economic Co-Operation and Development). Paris, France. pp.357-367.
• Tiedje JM, Thiem SM, Massol-Deya A, Ka JO, Fries MR. 1995. Tracking microbial populations effective in reducing exposure. Environ Health Perspect 103(supp.5):117-120. PMID:8565898
• Tithof PK, Contreras ML, Ganey PE. 1995. Aroclor 1242 stimulates the production of inositol phosphates in polymorphonuclear neutrophils. Toxicol Appl Pharmacol 131:136-143. PMID:7878669
• Tsai M, Webb RC, Loch-Caruso R. 1995. Acute inhibition of uterine contraction by 4-hydroxy-2',4',6'-trichlorobiphenyl (4OHTCB) may result from disruption of gap junctional communication. Environ Health Perspect 15:275.
• Tsai M, Webb RC, Loch-Caruso R. 1995. Inhibition of spontaneous oscillatory uterine contractions by 17β-estradiol is associated with disruption of gap junctional communication. Biol Reprod 52(supp.1):115.
• Ukrainczyk L, Chibwe M, Pinnavaia TJ, Boyd SA. 1995. Reductive dechlorination of carbon tetrachloride in water by mineral supported biomimetic cobalt macrocycles. Environ Sci Technol 29:439-445. PMID:22201391
• Upham BL, Yao JJ, Trosko JE, Masten S. 1995. Determination of the efficacy of ozone treatment systems using a gap junction intercellular communication bioassay. Environ Sci Technol 29:2923-2928. PMID:22148197
• Wilkins MD, Abriola LM, Pennell KD. 1995. An experimental investigation of rate-limited NAPL volatilization in unsaturated porous media: Steady state mass transfer. Water Resour Res 31:2159-2172.
• Xu S, Boyd SA. 1995. Cationic surfactant sorption to a vermiculitic subsoil via hydrophobic bonding. Environ Sci Technol 29:312-320. PMID:22201376
• Yun SK, Constantino VR, Pinnavaia TJ. 1995. A new polyol route to keggin-ion pillared layered double hydroxides. Microporous Mesoporous Mater 4:21-29.
• Yun SK, Pinnavaia TJ. 1995. Water content and particle texture of synthetic hydrotalcite-like layered double hydroxides. Chemistry of Materials 7:348-354.
• Zhou J, Fries MR, Chee-Sanford JC, Tiedje JM. 1995. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp nov. Int J Syst Bacteriol 45(3):500-506. doi:10.1099/00207713-45-3-500 PMID:8590677
• Zhou J, Tiedje JM. 1995. Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium. Microb Ecol 4(5):613-618. PMID:7582169

1993

• Tatara G, Dybas MJ, Criddle CS. 1993. Effects of medium and trace metals on the kinetics of carbon tetrachloride transformation by Pseudomonas sp. strain KC. Appl Environ Microbiol 59(7):2126-2131. PMID:8357248

1992

• Kukor JJ, Olsen RH. 1992. Complete nucleotide sequence of tbuD, the gene encoding phenol/cresol hydroxylase from Pseudomonas pickettii PKO1, and functional analysis of the encoded enzyme. J Bacteriol 174(20):6518-6526. PMID:1400204 PMCID:PMC207615
• Smith GB, Tiedje JM. 1992. Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. Appl Environ Microbiol 58(1):376-384. PMID:1539983 PMCID:PMC195218

1990

• Criddle CS, DeWitt JT, Grbic-Galic D, McCarty PL. 1990. Transformation of carbon tetrachloride by Pseudomonas sp. strain KC under denitrification conditions. Appl Environ Microbiol 56(11):3240-3246. PMID:2268146